Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5953g00001 ATGACTGTGGAAACCAGAACGGATGAACCCAGAGGACAATTTCCTGTGGGAATGCGTGTTCTTGCTGTTGACGATGACCCAACTTGTCTCTTGGTGTTGGAAACTCTCCTTCGGAGATGCCAATATCACGTAACAACGACCAATCAGGCAATAACAGCTTTGAAGATGCTAAGAGAAAACAAAAACAAGTTCGACCTGGTTATTAGTGATGTTCATATGCCTGACATGGACGGATTTAAGCTTCTTGAGCTTGTCGGTCTCGAGATGGACCTACCTGTCATAATGTTGTCTGCAAATGGCGACACCAAGCTGGTGATGAAGGGCATTACACATGGGGCTTGCGACTATCTTCTGAAACCTGTTCGAATTGAGGAGCTAAAGAACATTTGGCAGCATGTGATCAGGAGGAAGAAATTTGACTCAAAGGAGAAAAACAGTACTTGCAATCAAGACAGGCCTCATTCTGGTAGTGCTAACAATGGATTAGGTTCAGCAGGAGCTGGGTCTACTGATCAAAATGGAAAGATCACCAAGAAAAGGAAGGATCAGGATGATGAAGATGATGATGAGCATGAGCATGGTCATGACAACGATGATCCTTCAGCACAGAAGAAGCCTCGTGTTGTTTGGTCTGTCGAGCTCCACAGAAAGTTTGTTGCTGCTGTTAATCAATTAGGCATTGACAAGGCCGTGCCTAAAAAAATTCTGGATTTGATGAATGTTGAGAAACTCACAAGGGAGAACGTGGCAAGCCATCTCCAGAAATATAGGCTGTATCTGAAGAGGATCAGCTGTGTAGCGAACCAGCAGGCTAATATGGTGGCGGCCTTAGGCAGTACGGATGCATCCTATTTGAGAGTGGGATCTCTGGGTGGGTTGAAACATCTTCAGCCACTGAGTGCTTCTGGGCAGTTTCAGAACAATGTTTATCGGTCCCTCCCGTATAGTGGGATGATTGGAAGACTGAACACTCCTGCTGGTCTTGGTGTTCATGGATTGTCATCATCAGGAGTTCTTCAGTTGGGTCATCCGCAGAATTTAAACAACTCCTCCATGAATGATCCTCTCAAGTTCCAGTCATCCATTGCTCATGTCAGCCAGAATCAGAATAGTGGGTCGCTTCAGGGCATGCCAGTTTCTGGAGGGCTTGACCAGTTACAAGCCAATAAGGTTGTCAGTTCTGTTCAAGGTCCTACCACTGGTTTTGATGATAAAACAATGTCTCTCATCTCAAACAAGTTGCCTGATCCAAGAGCTAGAGTGAACTCTAGTTGCTCTAGATCTCCACTTGCGGGTATCGCGACCAACAGCTTGTTAGAACGAAATTCTCAAGACACTCAAGGTGGGAGAGGATATGAGAATCTTGCTTCAGTAGCGTCTCAACATTCAGACTTCTCTTTGCCTTTGATGGATAATCATAGTGGTAGGTGTAATGATAATTGGCCGAGCGCTGTGCAGTCATCAGGGATGCCCACTAATTCTTACCCAACAAATGATTGTCTTCATGGAGGGAGTACAAGTGGTGCTTCTGCCATCACTTCACTATCCACTAGGACCCATGATTCATTGGCAGATATGCAATCCCATGGACCCATTTTCACTAATAACAACACAGTAAACGTGGCTTATCAAGGATGGGAGGAGCATTCATTAGACTCTTTGATTCCTGTAAATGGTGCTGTTGATGCACCAGGATTACACAGAAACTTGGACTACAGTTTTGGCAATCCCTTAGAAATGAAGCATGAGGGGTTCACAAAATCAGCCGGAGATCCCTCTCTGAAACCAAATCAAGGATATATCATGGACCCCCATAAGGCACAACGGAGTCACATCTCTAATAATGTCGGTTCATTGGAGGACTTAGTCAGTGCAATGATGAAACAGGAGCAAGACTTCATGTGTGATGATTTCACTGATGGAACATCTATTTGA 1935 0.4481 MTVETRTDEPRGQFPVGMRVLAVDDDPTCLLVLETLLRRCQYHVTTTNQAITALKMLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDSKEKNSTCNQDRPHSGSANNGLGSAGAGSTDQNGKITKKRKDQDDEDDDEHEHGHDNDDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGSTDASYLRVGSLGGLKHLQPLSASGQFQNNVYRSLPYSGMIGRLNTPAGLGVHGLSSSGVLQLGHPQNLNNSSMNDPLKFQSSIAHVSQNQNSGSLQGMPVSGGLDQLQANKVVSSVQGPTTGFDDKTMSLISNKLPDPRARVNSSCSRSPLAGIATNSLLERNSQDTQGGRGYENLASVASQHSDFSLPLMDNHSGRCNDNWPSAVQSSGMPTNSYPTNDCLHGGSTSGASAITSLSTRTHDSLADMQSHGPIFTNNNTVNVAYQGWEEHSLDSLIPVNGAVDAPGLHRNLDYSFGNPLEMKHEGFTKSAGDPSLKPNQGYIMDPHKAQRSHISNNVGSLEDLVSAMMKQEQDFMCDDFTDGTSI 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5953g00001 644 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 349 IPR045279 GO:0009736
Pral5953g00001 644 FunFam Two-component response regulator 201 264 - -
Pral5953g00001 644 CDD REC_typeB_ARR-like 20 134 - -
Pral5953g00001 644 Gene3D - 201 264 - -
Pral5953g00001 644 MobiDBLite consensus disorder prediction 140 204 - -
Pral5953g00001 644 SUPERFAMILY CheY-like 17 139 IPR011006 -
Pral5953g00001 644 PIRSF RR_ARR_type-B 1 644 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pral5953g00001 644 SUPERFAMILY Homeodomain-like 203 262 IPR009057 -
Pral5953g00001 644 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 261 IPR017930 -
Pral5953g00001 644 MobiDBLite consensus disorder prediction 174 203 - -
Pral5953g00001 644 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
Pral5953g00001 644 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Pral5953g00001 644 FunFam Two-component response regulator 18 172 - -
Pral5953g00001 644 Pfam Myb-like DNA-binding domain 207 257 IPR001005 -
Pral5953g00001 644 Gene3D - 17 155 - -
Pral5953g00001 644 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Pral5953g00001 644 SMART REC_2 18 130 IPR001789 GO:0000160
Pral5953g00001 644 MobiDBLite consensus disorder prediction 150 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5953g00001 Pral-Chr5953 17810 21543 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5953g00001 1 389 Response Regulator Gene Family AT2G25180 60.152 5.40e-136 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pral5953g00001 Response_reg 5.6e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5953g00001 K14491 - gmx:100809002 762.681