Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5949g00002 ATGTCGCATTCTGGGAAGCCCGATTCTGAGCTAGGGTTAGCCGCTCTCCGCGATCGATTTCGCGACTCCCTGAGCTGCGAGGCGAACAAGCCGGACTTTCGCGAGCTCGATCTAGGGTCGCCGGTTTCGCCATTGCGGACCCGTCAGAGTGGACCTGCTGCCAGTGGACTCACCACTACTACCAGTAGCAGTTCCAGTTCATCTGGATCGGTTTCTGGGCGAAATGGGTACAACCCGGCCTCGAAAAGATCCGATACTGGTGCGAACAACCACTCCGGTGAGCTTTCTGGTTCCAGCGAGAGCAGCCCTACTGCCGCTGAGAGCCTTCGATCTGGGGGGAATGCCAGAAACTTCAAACCGGGCCACGCAAGATCCGATGCCGGAACCACCCCACCTTTAATCTATTCGGGTCAAAGCTCTTCCGTCACATCACCGGCGTTGAATGTTCTTCCTACCGGCAATATCTGTCCGTCTGGGAAGATTCTGAAGACGGGCATGGCGTCTAATCGGACCTCCAGGACGGACGTTTTGGGCTCCGGTACGGCCAATTATGGTCACGGAAGCATAATGCGGGGCGGTGGAACACCTAAACACACTGTCGGAGAGGCGGCAAGTATGGCAAACGCCAGGGCAACTGGTGGTGTCGGTTTCAAAGAACCGTTCAAGAAAGCGGCGGCAGGTTTGGATCCAGAAGAGATAAAGAGAGCGGGGAACGAGCAGTACAAGCGGGGTAACTTCACAGAGGCATTGAATCTTTACGATCGGGCAATTGGACTGTCCCCAGGTAATGCCGCCTACCGGAGCAACCGTGCGGCTGCATTGACAGCATTGGGTCGGTTGACTGAGGCGGTGAGGGAATGCGAGGAGGCTGTGAGATTGGATTCTAATTATGGAAGAGCGCACCAGCGTCTCGCTTCTCTTTTTCTCCGGTTAGGACAGGCTGAGAATGCGAGGAAGCACCTATTTAGTCATGGGCTGCAGCCGGATCCTTCTGAGTTGCAGAAGCTGCAATCGGTGGAGAAGCATATCAACAAATGTACTGATTTTCGAAGGATTGGTGATTGGAAAAGTGTCCTCCGGGAAGTTGATGCCGCTGTTGCTGCTGGAGCAGACTCTTCTCCTCAACTCTTTATGTGTAGAGCAGAAGCCCTTTTAAAGCAACACCAAATTGATGATGCCGAATTGATTCTGTCAGCTATTCCAAAAGCAGGATCACATTCTAAATCGTCATCTCAGGCAAGGTTTTTTGGGATGCTTTCTGAAGCTTATTCTTTCTTTGTTAGAGCTCAGATTGAGATGGCTTTGGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTGGCCTGATTGATCCCCGGAACGTTGAAGTTGCTGTTTTGCTCAGCAATGTTAGGATGGTAGCTAGAGCTCGAGCTCGTGGTAATGATCTTTTCAAATCTGAAAGGTTCACTGAAGCGTGCTCTGCATATGAGGAAGGTTTAAGGCTGGACCCTTCAAATGCTGTTCTCTATTGCAATAGAGCTGCCTGCTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTGCAATCAAGCTTTACACATCCAACCAAATTACACAAAAGCACTTCTTCGAAGGGCAGCCTCAAACAGCAAGCTAGAAAGGTGGGAAGAAGCAGTCAAAGATTATGAGGTCTTACGAAGAGAACTTCCAGATGACAATGAAGTTGCTGAAGCACATTTCCATGCGCATGTTGCATTGAAGAAATCTCGTGGGGAAGAAGTTCACAATTTGAAATTTGGTGGTGAAGTGGAAGGAGTGTCTGGTCTTGATCAGTTTAGGGCTGCAATTTCTTTACCAGGTGTGTCTGTTGTTCATTTTGAAATTGAATCTGATTCGCAATGCAAACAGTTATCACCATTCGTGAACACACTTTGCAGTCGATATCCTTCTGTTAACTTTCTCAAGGTTGATATTCAAAAAAGCCCAGCTATTGCAGCCGCTGAGAATGTTAGGTTGGTTCCAACTTTCAAGATCTACAAAAATGGCAGCCGTGTGAAGGAAATTGTTTGCCCCAGCCGTGATATGTTGGAACACTCTGTGAGGCACTACAGCACTTAG 2109 0.4927 MSHSGKPDSELGLAALRDRFRDSLSCEANKPDFRELDLGSPVSPLRTRQSGPAASGLTTTTSSSSSSSGSVSGRNGYNPASKRSDTGANNHSGELSGSSESSPTAAESLRSGGNARNFKPGHARSDAGTTPPLIYSGQSSSVTSPALNVLPTGNICPSGKILKTGMASNRTSRTDVLGSGTANYGHGSIMRGGGTPKHTVGEAASMANARATGGVGFKEPFKKAAAGLDPEEIKRAGNEQYKRGNFTEALNLYDRAIGLSPGNAAYRSNRAAALTALGRLTEAVRECEEAVRLDSNYGRAHQRLASLFLRLGQAENARKHLFSHGLQPDPSELQKLQSVEKHINKCTDFRRIGDWKSVLREVDAAVAAGADSSPQLFMCRAEALLKQHQIDDAELILSAIPKAGSHSKSSSQARFFGMLSEAYSFFVRAQIEMALGRFENAVTAAEKAGLIDPRNVEVAVLLSNVRMVARARARGNDLFKSERFTEACSAYEEGLRLDPSNAVLYCNRAACWFKLGQWERSIEDCNQALHIQPNYTKALLRRAASNSKLERWEEAVKDYEVLRRELPDDNEVAEAHFHAHVALKKSRGEEVHNLKFGGEVEGVSGLDQFRAAISLPGVSVVHFEIESDSQCKQLSPFVNTLCSRYPSVNFLKVDIQKSPAIAAAENVRLVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYST 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5949g00002 702 Gene3D Tetratricopeptide repeat domain 229 588 IPR011990 GO:0005515
Pral5949g00002 702 Pfam Tetratricopeptide repeat 502 535 IPR001440 GO:0005515
Pral5949g00002 702 ProSiteProfiles TPR repeat profile. 502 535 IPR019734 GO:0005515
Pral5949g00002 702 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 699 IPR044534 -
Pral5949g00002 702 FunFam TPR repeat-containing thioredoxin TTL4 594 701 - -
Pral5949g00002 702 Pfam Tetratricopeptide repeat 236 296 - -
Pral5949g00002 702 CDD TRX_family 607 694 - -
Pral5949g00002 702 Gene3D Glutaredoxin 596 701 - -
Pral5949g00002 702 SUPERFAMILY Thioredoxin-like 505 699 IPR036249 -
Pral5949g00002 702 ProSiteProfiles TPR repeat profile. 230 263 IPR019734 GO:0005515
Pral5949g00002 702 MobiDBLite consensus disorder prediction 43 111 - -
Pral5949g00002 702 Pfam Thioredoxin 609 693 IPR013766 -
Pral5949g00002 702 SUPERFAMILY TPR-like 230 458 IPR011990 GO:0005515
Pral5949g00002 702 SMART tpr_5 230 263 IPR019734 GO:0005515
Pral5949g00002 702 SMART tpr_5 422 455 IPR019734 GO:0005515
Pral5949g00002 702 SMART tpr_5 536 569 IPR019734 GO:0005515
Pral5949g00002 702 SMART tpr_5 264 297 IPR019734 GO:0005515
Pral5949g00002 702 SMART tpr_5 468 501 IPR019734 GO:0005515
Pral5949g00002 702 SMART tpr_5 502 535 IPR019734 GO:0005515
Pral5949g00002 702 MobiDBLite consensus disorder prediction 26 147 - -
Pral5949g00002 702 MobiDBLite consensus disorder prediction 131 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5949g00002 Pral-Chr5949 14024 18040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5949g00002 467 612 U-box Gene Family AT3G07370 28.415 2.10e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5949g00002 - - pcin:129314822 1229.54