Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5947g00002 ATGTCAACGCAAGGAGTTCAGCTGCATATAGGAGACAGTCATGTGGTGATGGATAATGGCATAGTGAAAGTATACTTATCCAAACCGGGAGGATTTGTCACAAGAATACAATATAATGGCGTTGATAATCTGCTTGAAGTTCTTGACCAAAGAGATAACAGAGGATACTGGGACGTCGTTTGGAGTGAAGAAGGCAGCACAGGAACCACCGGTACATTCGAGCGCGTCATCGGAACAAGTTTCAGAGTGATAGTGGAAAATGAGGAACTGGTGGAGATCTCATTTGCAAGAACGTGGGATCCATCTCTGAAGGGAAAGCTTTCGGCATTAAATATAGACAAGAGGTATATCATGCTTCGTAATTCCCCAGGCTTCTACTCATACGCCATTTTTGAGCACCTAGAAGAGTGGCCCGCTTTCAACATACCCCAGATAAGGATCGTCTTCCAACTGAGAAAAGACAGGTATCATTACATGGCCGTAGCGGATAATAGGCAAAGATTCATGCCACTTCCAGACGATAGATTACCAGGAAGAGGAAAAGAACTTGCTCCCCCAGAAGCAGTTTTACTTGTGAATCCTATAGAGCCAGAGTTCAAGGGGGAGGTGGATGACAAGTATCAGTACTCGAGTGAAAACAAAGATCTGAAGGTGCATGGGTGGATAAGCTCCGAAAAAGAAATCGAAGCTCCCATGGGGTTCTGGGTAATCATACCTAGCAATGAATTCCGATCAGGGGGACCCGTTAAACAGAACCTCACCTCTCATGTGGGCCCCTTTAGCCTCGCTATGTTCTTAAGTGCTCATTATGCTGGGGAGGATCTAGTTCTAAAACTCAAACCGAATGAGCCTTGGAAGAAAGTATTCGGGCCAATCTTTGTGTATCTGAACACTTTGTCGGATGATAAAGACATACGATGGCTCTGGGAGGATGCCAAAGATCAGATGACGAAGCAAGTTCAAAGTTGGCCGTATGATTTTCCAGATTCAGAGGATTATCAGAAGTCTGACCAACGAGGCAGTGTTTGCGGCACACTACGAGTCCGAGACAGGTGCCGGAGTGACGATTATATAATGGCACAAGGTGCATATGTAGGACTAGCCCCACCTGGAGACGCCGGGTCATGGCAGAGAGAATGCAAGGGATACCAATTCTGGACAAGAACAAACGAGGAAGGCTACTTCTCCATTAACAACATACGAAGTGGGGATTATAATCTCTATGCATGGGTTCCTGGTTTCATCGGAGAATACTGGAACAATGTTGTCCTCACCATCACCCCAGGTTGTGAAATAAATGTTGGTGACATTGTCTATGAGCCCCCAAGAGAGGGTCCCACCCTATGGGAGATAGGCATTCCTGATCGCTCTGCTGCTGAATTCTATGTTCCTGATCCTGATCCGATGTACATTAACAAGCTATATGTCAACCATCCAGATAAGTTTAGGCAGTATGGCTTGTGGGAAAAGTACACAGAACTATATCCAAAGGAAGATTTGGTTTATACAGTCGGTGTTAGTGACTATAGAAACGATTGGTTCTTTGCACAAGTCACCAGGAAAAAAGATGATGGAACTTACCAAGGTACTACTTGGCAAATTAAGTTCAAGCTTGATAACGTGGTAGGAGGTGGGACGTATAGGTTAAGACTGGCACTCGCAACTGCAAATGCAGCCGAATTACAGGTTAGAGTTAATGATCCGAAGCAAAACCCTCCTCTATTCACGACTGGTTTGATTGGAAAGGACAACACAATTGCTAGGCATGGAGTCCATGGACTCTACAGGCTATACAGCATTGGCGTGTCGGGTCGTTTTCTGATCAAAGGCGATAATACTTTATATCTCACGCAGGCTGCTGCTACTGGTCCTTTTGAAGGGATCATGTATGACTATATACGCTTTGAAAGCCCACAAGCCACTAGTTCCCCTTCATAA 1938 0.4515 MSTQGVQLHIGDSHVVMDNGIVKVYLSKPGGFVTRIQYNGVDNLLEVLDQRDNRGYWDVVWSEEGSTGTTGTFERVIGTSFRVIVENEELVEISFARTWDPSLKGKLSALNIDKRYIMLRNSPGFYSYAIFEHLEEWPAFNIPQIRIVFQLRKDRYHYMAVADNRQRFMPLPDDRLPGRGKELAPPEAVLLVNPIEPEFKGEVDDKYQYSSENKDLKVHGWISSEKEIEAPMGFWVIIPSNEFRSGGPVKQNLTSHVGPFSLAMFLSAHYAGEDLVLKLKPNEPWKKVFGPIFVYLNTLSDDKDIRWLWEDAKDQMTKQVQSWPYDFPDSEDYQKSDQRGSVCGTLRVRDRCRSDDYIMAQGAYVGLAPPGDAGSWQRECKGYQFWTRTNEEGYFSINNIRSGDYNLYAWVPGFIGEYWNNVVLTITPGCEINVGDIVYEPPREGPTLWEIGIPDRSAAEFYVPDPDPMYINKLYVNHPDKFRQYGLWEKYTELYPKEDLVYTVGVSDYRNDWFFAQVTRKKDDGTYQGTTWQIKFKLDNVVGGGTYRLRLALATANAAELQVRVNDPKQNPPLFTTGLIGKDNTIARHGVHGLYRLYSIGVSGRFLIKGDNTLYLTQAAATGPFEGIMYDYIRFESPQATSSPS 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5947g00002 645 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 639 - -
Pral5947g00002 645 SUPERFAMILY Starch-binding domain-like 339 434 IPR013784 GO:0030246
Pral5947g00002 645 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
Pral5947g00002 645 CDD RGL4_C 449 636 - -
Pral5947g00002 645 Pfam Polysaccharide lyase family 4, domain III 447 634 IPR029411 -
Pral5947g00002 645 CDD RGL4_M 338 437 IPR029413 -
Pral5947g00002 645 Gene3D - 445 635 - -
Pral5947g00002 645 FunFam Rhamnogalacturonate lyase B 335 434 - -
Pral5947g00002 645 Pfam Rhamnogalacturonate lyase family 8 203 IPR010325 -
Pral5947g00002 645 Gene3D - 335 434 - -
Pral5947g00002 645 Gene3D - 7 275 IPR014718 GO:0030246
Pral5947g00002 645 SUPERFAMILY Galactose-binding domain-like 445 636 IPR008979 -
Pral5947g00002 645 CDD RGL4_N 12 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5947g00002 Pral-Chr5947 4337 8218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5947g00002 1 638 Polysaccharide Lyase AT1G09890 64.632 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5947g00002 K18195 - gmx:100815677 1073.15