Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5947g00001 TGTTTCTCTCTGTTCCTCGTAGTTCTTAGTATCGATGAATGCTTTTCAGCAACCAAAAGAAAAAAGTTTATCACGGATGGGTGCGTCCCAGCGAGTGGGGCTTATGTGGGATTGGCTGCCGCAGGAGATGCCGGATCTTGGCAGAGAGAATACAACGGTTATCAGTTTTGGACCATCACTGATGATAAAGGCTACTTCACAATCACTGACATACGGGCCGCGCAATATAATCTTTACTCCTGGGTCACTGGGTTTATCGGTGATTATCGATATAACAATGTCATTAACATAACCTCAGGTTGTGAAGATGATGCGGGAGAACTTGTTTATGAGCCTCCAAGAGATGGCCCTACACTGTGGGAAATAGGAACCCCTGATCGCTCTGCAGCTGAATTCTATATCCCAGATCCAAATCCCAAGTACATTAACAGACTTTATGTCAATCATCCAGATAGGCTAAGGCAATATGGATTGTGGGAGAGGTATGCAGAATTGTATCCAAATGAAGACTTGGTCTACACCGTAGGAGTCAGTGACTACAAGAAAGATTGGTTCTTTGCTCAAGTTAATAGGAAGAAAGATAACAACACATACCAAGAAACCACATGGCGAATTAATTTCAAACTCGATAATGTGAATACGAATGGGACCTACAAATTGCGACTGGCTCTGGCGTCTGTGCACTCTGCTGAGCTGCAAATTCGGGTAAATAACTCAGAAGCAAACCCACCTTTGTTCTCGAGTGGAGAGATTGGAAAGGAGAACACGATAGCTAGGCAAGGAATTCACGGGCTGTACTGGCTGTTCAACGTTGATGTACAAGGCACTCTACTTGTGCAGGGAAACAATGCCTTTTTTCTAAAGCAAACAAGAAACACAAGTCCTTTTCAAGGGATTTTGTATGATTATGTTCGCTTAGAAGGGCCCTCTTCTATAACTAGTAATGATCGTAATATATGA 960 0.4302 CFSLFLVVLSIDECFSATKRKKFITDGCVPASGAYVGLAAAGDAGSWQREYNGYQFWTITDDKGYFTITDIRAAQYNLYSWVTGFIGDYRYNNVINITSGCEDDAGELVYEPPRDGPTLWEIGTPDRSAAEFYIPDPNPKYINRLYVNHPDRLRQYGLWERYAELYPNEDLVYTVGVSDYKKDWFFAQVNRKKDNNTYQETTWRINFKLDNVNTNGTYKLRLALASVHSAELQIRVNNSEANPPLFSSGEIGKENTIARQGIHGLYWLFNVDVQGTLLVQGNNAFFLKQTRNTSPFQGILYDYVRLEGPSSITSNDRNI 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5947g00001 319 Pfam Polysaccharide lyase family 4, domain II 32 103 IPR029413 -
Pral5947g00001 319 Gene3D - 116 307 - -
Pral5947g00001 319 CDD RGL4_C 120 307 - -
Pral5947g00001 319 Pfam Polysaccharide lyase family 4, domain III 118 306 IPR029411 -
Pral5947g00001 319 CDD RGL4_M 29 108 IPR029413 -
Pral5947g00001 319 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 21 310 - -
Pral5947g00001 319 SUPERFAMILY Starch-binding domain-like 52 92 IPR013784 GO:0030246
Pral5947g00001 319 SUPERFAMILY Galactose-binding domain-like 115 307 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5947g00001 Pral-Chr5947 1208 3193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5947g00001 20 310 Polysaccharide Lyase AT1G09890 64.948 1.32e-140 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5947g00001 K18195 - gmx:100786488 495.352