Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5946g00003 ATGTCAAGGTTTCGAGCTTTAAATCGCCAGATTCGGATTCTTGCGACAGGGAATTCTGGTGGGTCCATTTCATCCCAGGGTTCAGGCAACGGTGGTTTAGGTGACTCGTGTGCTGATGAAGTGATGAAAACGTCTTCACCAGATTCTTACAGCGACGACAGAGACATTTCTTCTCATGGGATTACTCATCAAAATATGAAATTGGAGGACATGGTAAAAAACTGTGATTTGAGGAAGAAAAGGAAGAAGCAACAGAATGAAGGAAATACCGAGGCGAGAACTACCAAGTACCGAAAGTCTACGGTGAATACCTCTCAACAGTCTGATCTTAATGCCGTGGATGAAGAGGACGGGAAAAGGAAGGCTAGGCTGATGAGGAATAGAGAAAGTGCCCAGCTCTCCAGACAGAGAAAGAAGCACTATGTGGAGGAGCTTGAGGAGAAGGTGAGGTCAATGCATTCCACCATAACTGATTTAAGCAGTAAGGTATCGTTTGTTATGGCCGAGAATGCTGCTTTGAGACAGCAATTGAGTGGCGGTGGAACTTGCCCGCCGCCAGCTCCAGGGGTGTACCCTCATCCTCCAATGGCACCAATGCCTTTTCCATGGGTGCCGTATGCACCCTATGTTGTCAAACCGCAAGGTTCTCAGGTTCCTCTAGTTCCTATCCCCAGATTGAAGTCTCAACAGTCGCAATCTGCGCCAAAAGCCAAAAAATCCGATAATAAGAAGACTGAAGGAAAAACTAAGAAGGTTGCTAGCATTAGCTTGTTGGGTTTGTTTTTCTTTATATTTCTTTTTGGTGGACTCGTTCCTCTAGTTAATGTTAAGTTTGGAGATATATGGGACAATGTTCCCAGGAGGCCCATCTCTGCTACTGATAGGTTCTATAGTCACCACGGAGGAAAAGCTTGGGAGGTTAATGGTCATATAAATACATCTGAAGGAGAAAAGGGAGTAAAATTCTCTAGCGGGAATTTGGGTATTTCCGACAGAACGTTATATGAGAAAGTTCGCAAATTAGAAGAAACACTGAGACAACAGGACTCACCATGTAGAATGAGCTCAGATGACTTTGTTCATAGAGGAAATACTAGTGACTCCGAGCCTCTTCTTGCTTCTCTGTATGTTCCAAGGAATGATAAGCTAGTGAAAATTGATGGAAACTTGATAATTCACTCTGTGGCTACTGAAAAAGCCATGGCATCTGATACTGCTCATACAGAAAAGAATACGAGAGAAAATGGATTGATGATTTCTAAAAATTGGGCTGCACTGGCTATTCCTGACGTTGCAAGGAACAGCGGTCAACAACCTCACTCATATAGGAGCCCGCCTGAACAGCGGAAGGCTCTTGCCTCTGGTTCAGCTGAAACATTGAAGAACCATTTAAAGTCAACTGCGACTGATGGTAAAATGCAACAATGGTTTCGTGAAGGTCTTGCTGGGCCAATGTTGAGTTCTGGGATGTGCACGGAGGTTTTCCAGTTTGATGCTTCGCCAAAACCGGGAGCTATAGTTCCAGCATCATCAGTTGCAAATGTTTCTCCTGTTAACCGCCAGAATGATACAAGCATCAACAAGAGAAGGAATAGAAGGTTCCTTCACAAGCTGCCACGTTCCCTTGCCGGATCTGGTCTCAACACAAGTGAAGAACATGTTATGAGAATCCAGAACGAGAACCTCCATGGTAATAAATCAACATCTTCCATGGTGGTTTCGGTCCTTGTTGATCCCAAGAGGGGAGATGCTGACGTGGATGGTGTGATGAAGCCTAAATCACTTCCTCGGATTTTTGTGGTTGTGCTTATAGATAGTGTCAAGTATGTCACTTACTCGTGTGGCCTTCCACGAGCATCTCCCCATCTTGTGACTGCCTGA 1881 0.4476 MSRFRALNRQIRILATGNSGGSISSQGSGNGGLGDSCADEVMKTSSPDSYSDDRDISSHGITHQNMKLEDMVKNCDLRKKRKKQQNEGNTEARTTKYRKSTVNTSQQSDLNAVDEEDGKRKARLMRNRESAQLSRQRKKHYVEELEEKVRSMHSTITDLSSKVSFVMAENAALRQQLSGGGTCPPPAPGVYPHPPMAPMPFPWVPYAPYVVKPQGSQVPLVPIPRLKSQQSQSAPKAKKSDNKKTEGKTKKVASISLLGLFFFIFLFGGLVPLVNVKFGDIWDNVPRRPISATDRFYSHHGGKAWEVNGHINTSEGEKGVKFSSGNLGISDRTLYEKVRKLEETLRQQDSPCRMSSDDFVHRGNTSDSEPLLASLYVPRNDKLVKIDGNLIIHSVXATEKAMASDTAHTEKNTRENGLMISKNWDXALAIPDVARNSGQQPHSYRSPPEQRKALASGSAETLKNHLKSTATDGKMQQWFREGLAGPMLSSGMCTEVFQFDASPKPGAIVPASSVANVSPVNRQNDTSINKRRNRRFLHKLPRSLAGSGLNTSEEHVMRNXQNENLHGNKSTSSMVVSVLVDPKRGDADVDGVMKPKSLPRIFVVVLIDSVKYVTYSCGLPRASPHLVTA 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5946g00003 629 SMART brlzneu 115 179 IPR004827 GO:0003700|GO:0006355
Pral5946g00003 629 PANTHER BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED 36 626 - -
Pral5946g00003 629 MobiDBLite consensus disorder prediction 432 458 - -
Pral5946g00003 629 MobiDBLite consensus disorder prediction 17 119 - -
Pral5946g00003 629 MobiDBLite consensus disorder prediction 46 60 - -
Pral5946g00003 629 Pfam bZIP transcription factor 116 177 IPR004827 GO:0003700|GO:0006355
Pral5946g00003 629 MobiDBLite consensus disorder prediction 95 111 - -
Pral5946g00003 629 Gene3D - 118 179 - -
Pral5946g00003 629 MobiDBLite consensus disorder prediction 221 245 - -
Pral5946g00003 629 MobiDBLite consensus disorder prediction 69 94 - -
Pral5946g00003 629 MobiDBLite consensus disorder prediction 17 32 - -
Pral5946g00003 629 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 117 177 IPR004827 GO:0003700|GO:0006355
Pral5946g00003 629 FunFam bZIP transcription factor 49 118 180 - -
Pral5946g00003 629 SUPERFAMILY Leucine zipper domain 119 177 IPR046347 GO:0003700|GO:0006355
Pral5946g00003 629 Coils Coil 142 162 - -
Pral5946g00003 629 CDD bZIP_HY5-like 120 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5946g00003 Pral-Chr5946 14614 17285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5946g00003 23 628 bZIP Transcription Factor Family AT2G40950 52.188 3.53e-154 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pral5946g00003 bZIP_1 5e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5946g00003 K25783 - gmx:100127362 661.759