Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5945g00009 ATGGGAATCGAAATGGACTACAAAATCAAGACCACCACTTCACCCTCTTCCTCTTGCTCTCCTCCTCCTCCTCCACCTCTGCCTTCACAACCACAATCGCCGCCGTCTCCGGTGGTGGTTTCGCCTTGTGCCGCCTGCAAGATCCTCCGCCGTCGCTGCGTCGAGAAGTGTGTTCTGGCGCCTTACTTCCCGCCGACCGATCCGCTCAAGTTCACCATTGCTCATAGAGTCTTCGGAGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCAGAGTCACAAAGAGCAGATGCAGTGAGCAGCATGGTGTACGAAGCAAATGCGAGGATAAGGGACCCAGTGTATGGTTGTGCTGGAGCCATATGCCAGCTTCAGAAGCAAGTGAGCGAGCTGCAAGGTCAGCTAGCCAAGGCTCAAGCCGAGCTGGTCAACATGCAGTGCCAACAAGCCAACTTGGTGGCTCTCATTTGCATGGAAATGAGCCAATCTCACCCTGAGCCTCACTCCATGGTGGCGTCTCAGTCGGCTCAGCTGCCACCCCACGAAGATATGAGCTGCTTGTTAGATGACAACAGCATGAACAACCTCGGCTCGGCTTGGCCTTGGGAGCCTCTTTGGACATGA 624 0.5481 MGIEMDYKIKTTTSPSSSCSPPPPPPLPSQPQSPPSPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQGQLAKAQAELVNMQCQQANLVALICMEMSQSHPEPHSMVASQSAQLPPHEDMSCLLDDNSMNNLGSAWPWEPLWT 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5945g00009 207 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Pral5945g00009 207 MobiDBLite consensus disorder prediction 17 34 - -
Pral5945g00009 207 MobiDBLite consensus disorder prediction 1 34 - -
Pral5945g00009 207 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 41 175 - -
Pral5945g00009 207 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Pral5945g00009 207 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5945g00009 Pral-Chr5945 37273 38928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5945g00009 38 207 AS2 family AT1G07900 67.647 1.33e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pral5945g00009 LOB 4.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5945g00009 - - gmx:100806667 278.87