Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5944g00003 ATGTCGATGGCATTTTTGCCAGATTTGGTGACAATACAGACACTTCTGCTTGCCCCAAATAATCTTAGCAAACCCAACAAAAAATGGCGCTCTGCATTTCTTAGTATATATTGTTACAGAGCTCTCTTGTCTCACTTCAAATCCACTTTGCTTTCCTCCACCACCGCCATCAAGAAGAGAAAGCCTAAGCTGTCACCTTCTTCCTCCTACACTGTCATCGATTTAGACACAGATCATTCCTTCTTCGCTGTTAGCCAAACCAAACTCACCAATCTGGTGAAGGAGAAAAATGAAGAGACCCTGCAAAATCTTGGTGGGGTGCATGGCGTGGTCTCTGCTCTAAAAACCGACATTGAAAATGGAGTCAAAGGCGGTGATGATGATGATGATCCCAGTGATGTCATGCGACGGCGCGACGCGTTTGGTTCTAACACCTATCCCAAACCACCTACAAGAGGTTTCTTTCATTTTGTGATTGAAGGCTTCAAGGACCCTACCATTCTCATTCTCTTGGTTTGTGCTGCTCTGTCTCTTGGCTTCGGCATCAAAGAGAATGGAATCAAAGAAGGCTGGTACGAAGGTGGAAGCATCTTTGTTGCTGTTTTTCTAGTCATTGCTGTATCTTCCATCAGTAATTTCAGACAGAGCAGACAATTCGACAAGCTGTCCCAAGTTAGCAATAACATCCATGTAGATGTTGTACGAAGTGGTCGCCGGCAACAAGTTTCCATATACGACATCGTGGCGGGTGATGTCGTGTGGCTGAAGATTGGAGACCAAGTTCCTGCTGATGGCTTATTTTTGGAAGGTCATTCTTTGCAAGTTGATGAGTCTAGCATGACAGGTGAGAGCGACCACATAGAGATTAACAGTGACAAAAATCCATTTTTGTTTTCCGGGACTAAGGTGGCTGACGGGTTTGCCAAAATGCTCGTCACTTCCGTTGGCACGAACACAACATGGGGTCAAATGATGGGTTCCATAAGCAGAGACAATAATGAAGAAACTCCTCTGCAGGAACGCCTCAATAAGCTTACTTCTGCCATTGGCAAGGTTGGTTTGGCAGTGGCTTTTCTTGTTCTTGTTGTTATGTTAGTTCGCTACTTCACAGGGAACACCACTGATGAGAATGGGAATAAGGAGTTCAAGGGAAGCAGCACTAAGTTTAATGACATAATGAATGGAGTTGTGGGAATCGTTGCTGCTGCTGTTACTATTGTCGTGGTCGCGATTCCAGAGGGGCTTCCTTTGGCTGTGACATTGACGCTTGCTTATTCCATGAAGAAGATGATGGCTGATATGGCTATGGTGAGGAAGCTCTCTGCCTGCGAGACAATGGGATCAGCCACAACCATTTGTACTGATAAGACTGGCACACTCACGCTTAATGAGATGAAAGTGACGAAGTTCTGGCTTGGACAGCAACCTATGGAAGAGGAACCTCATCAATCATCAGTTCATTCAGATGTCCTACAACTAATCAAAGAAGGGGTTGCCCTTAACACCACAGGTAGTGTTTACAAGTCTAAAACAAAAAATTCTGAATACGAATTTTCAGGTAGTCCAACAGAAAAGGCCATTCTTTCATGGGCTGTACTTGATTTGGGCATGAACATGGAGGAATTGACGCAAAGTTTTACCATCCTTCATGTGGAGGCCTTCAATTCAAAGAAGAAGAGGAGTGGGGTATTGATTAAAAGGAAGGTAGACAACAAAATCCATGCACATTGGAAAGGAGCAGCTGAGATGGTGCTCAGGTTGTGTTCAAAGTACTACGATGCTTCTGGCAATATGAAAGATCTTGACGATGACAAAAAGTTAGTGTTTGAGCAAATCATTCAAGGGATGGCGGCTAGCAGCCTTAGGTGTATTGCTTTTGCACATACAGAAGAAGTTGAAGAAGATGATGGAGGAATCAAAGATATAAGAGAAGAAGGGCTCACCCTCTTAGGACTTGTTGGTATTAAGGATCCATGTCGTCCAGGAGTCAAGAACGCTGTAAACAATTGCCAACAAGCTGGAGTGACTGTCAAAATGATCACAGGAGACAATATTTTCACAGCCAAAGCCATAGCCATAGAATGCGGCATCCTCCAGCCTAATCAAGACACATCTGAAGCGGTCATTGAAGGTGAGGTATTTCGAAGCTTGTCTCTCGAGGAAAGACTAAACAAAGTGGAGAAAATTTGTGTCATGGCAAGATCCTCTCCCTTTGACAAGCTCCTTATGGTTCAATGCCTCAAACAGAAAGGTCACGTAGTTGCCGTAACAGGAGATGGCACCAATGATGGTCCGGCATTAAAGGAAGCAGATATAGGACTTTCTATGGGGATTCAAGGAACTGAAGTTGCGAAGGAAAGCTCAGACATTGTTATCTTGGATGATAATTTCACCTCAGTTGCCACAGTTCTTAAATGGGGAAGATGTGTTTATAACAACATCCAAAAGTTCATTCAATTTCAGCTTACGGTAAATGTTGCAGCTCTTGCAATTAACTTTGTGGCTGCAGTATCAGCAGGAGAAGTGCCATTAACCGCAGTCCAGCTATTGTGGGTGAACCTAATAATGGACACTTTGGGTGCTCTTGCTTTAGCAACAGAGAAGCCTACGAGGGAGTTATTGGACAAACCCCCAGTGGGTAGAACTGAGCCTCTCATCACCAACATCATGTGGAGAAATCTCTTAGCCCAAGCTTTATACCAGATCACAATTCTATTGACGTTACAGTTCAAGGGTGAGGCCATATTTGGGGTGAGTTCAAAGGTAAATGACACTTTGATTTTCAACACATTTGTGTTATGCCAAGTGTTCAATGAGTTTAACGCAAGGAAGTTGGAGAAGAAGAATGTGTTTCAAGGGATTCACAAGAGCAGGTTGTTTCTGGGGATCATAGGGATGACCATTGTGCTTCAGGTGTTGATGGTGGAGTTTCTAAAGAAATTTGCAGACACTGAGAGATTGAATTGGGGGCAGTGGGGTGCATGCATTATAATTGCAGCTATTTCTTGGCCTATTGGTTGGCTCGTCAAGTTCATTCCTGTCCCAGAGAGACCATTGCTTAGTTTCCTGAACCTGAAGAAGCAATTGATACTTTCTAGTAGATGA 3105 0.4377 MSMAFLPDLVTIQTLLLAPNNLSKPNKKWRSAFLSIYCYRALLSHFKSTLLSSTTAIKKRKPKLSPSSSYTVIDLDTDHSFFAVSQTKLTNLVKEKNEETLQNLGGVHGVVSALKTDIENGVKGGDDDDDPSDVMRRRDAFGSNTYPKPPTRGFFHFVIEGFKDPTILILLVCAALSLGFGIKENGIKEGWYEGGSIFVAVFLVIAVSSISNFRQSRQFDKLSQVSNNIHVDVVRSGRRQQVSIYDIVAGDVVWLKIGDQVPADGLFLEGHSLQVDESSMTGESDHIEINSDKNPFLFSGTKVADGFAKMLVTSVGTNTTWGQMMGSISRDNNEETPLQERLNKLTSAIGKVGLAVAFLVLVVMLVRYFTGNTTDENGNKEFKGSSTKFNDIMNGVVGIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADMAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTKFWLGQQPMEEEPHQSSVHSDVLQLIKEGVALNTTGSVYKSKTKNSEYEFSGSPTEKAILSWAVLDLGMNMEELTQSFTILHVEAFNSKKKRSGVLIKRKVDNKIHAHWKGAAEMVLRLCSKYYDASGNMKDLDDDKKLVFEQIIQGMAASSLRCIAFAHTEEVEEDDGGIKDIREEGLTLLGLVGIKDPCRPGVKNAVNNCQQAGVTVKMITGDNIFTAKAIAIECGILQPNQDTSEAVIEGEVFRSLSLEERLNKVEKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDGPALKEADIGLSMGIQGTEVAKESSDIVILDDNFTSVATVLKWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTRELLDKPPVGRTEPLITNIMWRNLLAQALYQITILLTLQFKGEAIFGVSSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFQGIHKSRLFLGIIGMTIVLQVLMVEFLKKFADTERLNWGQWGACIIIAAISWPIGWLVKFIPVPERPLLSFLNLKKQLILSSR 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5944g00003 1034 Gene3D - 463 658 IPR023299 GO:0000166
Pral5944g00003 1034 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 663 IPR023299 GO:0000166
Pral5944g00003 1034 PRINTS P-type cation-transporting ATPase superfamily signature 276 290 - -
Pral5944g00003 1034 PRINTS P-type cation-transporting ATPase superfamily signature 757 776 - -
Pral5944g00003 1034 PRINTS P-type cation-transporting ATPase superfamily signature 651 662 - -
Pral5944g00003 1034 PRINTS P-type cation-transporting ATPase superfamily signature 673 683 - -
Pral5944g00003 1034 PRINTS P-type cation-transporting ATPase superfamily signature 781 793 - -
Pral5944g00003 1034 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Pral5944g00003 1034 SUPERFAMILY Calcium ATPase, transduction domain A 228 327 IPR008250 -
Pral5944g00003 1034 Pfam E1-E2 ATPase 230 431 - -
Pral5944g00003 1034 CDD P-type_ATPase_Ca_PMCA-like 136 890 - -
Pral5944g00003 1034 PANTHER CATION TRANSPORTING ATPASE 69 1014 - -
Pral5944g00003 1034 SUPERFAMILY HAD-like 451 862 IPR036412 -
Pral5944g00003 1034 FunFam Calcium-transporting ATPase 774 1016 - -
Pral5944g00003 1034 Pfam haloacid dehalogenase-like hydrolase 450 771 - -
Pral5944g00003 1034 NCBIfam calcium-translocating P-type ATPase, PMCA-type 79 1014 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Pral5944g00003 1034 SFLD p-type atpase 435 810 IPR044492 -
Pral5944g00003 1034 FunFam Calcium-transporting ATPase 652 802 - -
Pral5944g00003 1034 SMART Cation_ATPase_N_a_2 103 182 IPR004014 -
Pral5944g00003 1034 SUPERFAMILY Calcium ATPase, transmembrane domain M 105 1014 IPR023298 -
Pral5944g00003 1034 FunFam Calcium-transporting ATPase 201 329 - -
Pral5944g00003 1034 Pfam Cation transporting ATPase, C-terminus 842 1012 IPR006068 -
Pral5944g00003 1034 SFLD Haloacid Dehalogenase 435 810 - -
Pral5944g00003 1034 FunFam Calcium-transporting ATPase 463 658 - -
Pral5944g00003 1034 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Pral5944g00003 1034 Gene3D - 450 802 IPR023214 -
Pral5944g00003 1034 NCBIfam HAD-IC family P-type ATPase 729 838 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral5944g00003 1034 NCBIfam HAD-IC family P-type ATPase 197 370 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral5944g00003 1034 NCBIfam HAD-IC family P-type ATPase 395 493 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral5944g00003 1034 Gene3D - 160 1012 - -
Pral5944g00003 1034 Gene3D - 132 329 - -
Pral5944g00003 1034 PRINTS H+-transporting ATPase (proton pump) signature 757 773 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral5944g00003 1034 PRINTS H+-transporting ATPase (proton pump) signature 789 814 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral5944g00003 1034 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral5944g00003 1034 Pfam Cation transporter/ATPase, N-terminus 105 177 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5944g00003 Pral-Chr5944 78315 81911 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5944g00003 8 1028 Primary Pumps ATPases AT3G22910 68.677 0.0 1340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5944g00003 K01537 - gmx:100793918 1531.15