Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5944g00001 | ATGACAGGTGAGAGCGACCACGTAGAGATTAACGGCGACAAAAACCCATTTTTGTTTTCTGGGACTAAGGTGGCTGACGGGTTTGCTAAAATGCTCGCCACTTCTGTCGGTACGAACACAACATGGGGTCAAATGATGGGTTCCATAAGCAGAGACAACAATGAAGAAACTCCTCTGCAAGAACGCCTCAATCAGCTTACTTCTGCCATTGGCAAAGTTGGCTTGGCAGTGGCTTTTCTTGTTCTTGTTGTTATGTTAGTTCGCTACTTCACAGGGAACACAACTGATGAGAATGGGAATAAGGAGTTCAAGGGAAGCAGCACCAAGTTTGATGACATAATGAATGGAGTTGTGGGAATTGTTGCTGCTGGCGTTACTATTGTCGTGGTCGCGATTCCAGAAGGGCTTCCATTGGCTGTGACATTGACGCTTGCTTATTCCATGAAGAAGATGATGGCTGATATGGCTATGGTGAGGAAGCTCTCTGCCTGCGAGACAATGGGGTCGGCCACAACCATTTGCACTGATAAGACTGGCACACTCACGCTTAATGAGATGAAAGTGACGAAGTTCTGGCTTGGACAGCAACCTATGGAAGAGGAACCTTATCAATCATCAGTTCATTCGGATGTCCAACAACTAATCAAAGAAGGGGTTGCCTTTAACACCACAGGTAGTGTTTACAAGTCTAAAACAAAAAATTCCGAATATGAATTTTCAGGTAGTCCAACAGAAAAAGCCATTCTTTCATGGGCTGTTCTTGATTTGGGCATGAACATGGAGGAATTAACGCAAAGTTTTACCATCCTTCATGTGGAGGCCTTCAATTCAAAGAAGAAGATGAGTGGGGTTTTGATTAAAAGGAAGGCAGACAACAAAATCCATGCACATTGGAAAGGAGCAGCTGAGATGGTGCTCAGGTTGTGTTCAAAGTACTACGATGCTTCTGGCAATATGAAAGAACTTGATGACGACAAAAAGCTAGTCTTTGAGCAAATCATTCAAGGGATGGCGGCCAGCAGCCTTCGGTGTATTGCTTTTGCACAAACAGAAGTAGCTGAAGAAGATGATAGAGGAATCAAAGATATAAGAGAAGAAGGGCTCACCCTCTTAGGACTTATTGGTATTAAGGATCCATGTCGTCCAGGAGTCAAGAACGCTGTAAACAATTGCCAACAAGCTGGAGTGAATGTCAAAATGATCACAGGGGACAATATTTTCACAGCCAAAGCCATAGCTACAGAATGCGGCATCCTCCATCCTAATCAAGACACATCTGAAGCAGTCATCGAAGGTGAGGTATTTCGAAACTTGTCTGTCGAGGAAAGACTAAACAAAGTGGAGAAAATTTGTGTGATGGCAAGATCCTCCCCCTTTGACAAGCTCCTAATGGTTCAATGCCTCAAACAGAAAGGTCACGTCGTTGCCGTCACAGGAGATGGCACCAATGATGCTCCAGCATTAAAGGAAGCTGATATAGGACTTTCTATGGGGATTCAAGGCACTGAAGTTGCAAAGGAAAGCTCAGACATTGTTATCTTGGATGATAATTTCACCTCAGTTGCCACAGTTCTTAAATGGGGAAGATGTGTTTATAACAACATCCAAAAGTTTATTCAATTTCAGCTTACAGTAAATGTTGCAGCTCTTGCAATTAACTTTGTGGCTGCAATATCAGCAGGAGAAGTGCCATTAACCGCAGTCCAGCTATTGTGGGTGAACCTAATAATGGACACTTTGGGTGCTCTAGCTTTAGCAACAGAGAAGCCTACGAGGGAGTTATTGGACAAACCCCCAGTGGGTAGAAGTGAGCCTCTCATCACTAATATCATGTGGAGAAATCTCTTAGCCCAAGCTTTATACCAGATCACAATTCTATTGACATTACAGTTCAAGGGTGAGGCCATATTCGGGGTGAGTTCAAAGGTAAATGACACTTTGATTTTCAACACATTTGTGTTATGCCAAGTGTTCAATGAGTTTAATGCAAGGAAGTTGGAGAAGAAGAATGTGTTCCAAGGGATTCAAAAGAACAGGTTGTTTTTGGGAATCATAGGGATAACTATTGTGCTTCAGGTGTTGATGGTGGAGTTTCTTAAGAAATTTGCAGACACTGAAAGATTGAATTGGGGGCAATGGGGTGCATGCATTCTAATTGCAGCTATTTCTTGGCCTATCGGTTGGGTCGTCAAGTTCATTCCCGTCCCAGAGAGACCACTGCTTAGTTTCTTGAACCTGAAAAAGCAATGA | 2250 | 0.4324 | MTGESDHVEINGDKNPFLFSGTKVADGFAKMLATSVGTNTTWGQMMGSISRDNNEETPLQERLNQLTSAIGKVGLAVAFLVLVVMLVRYFTGNTTDENGNKEFKGSSTKFDDIMNGVVGIVAAGVTIVVVAIPEGLPLAVTLTLAYSMKKMMADMAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTKFWLGQQPMEEEPYQSSVHSDVQQLIKEGVAFNTTGSVYKSKTKNSEYEFSGSPTEKAILSWAVLDLGMNMEELTQSFTILHVEAFNSKKKMSGVLIKRKADNKIHAHWKGAAEMVLRLCSKYYDASGNMKELDDDKKLVFEQIIQGMAASSLRCIAFAQTEVAEEDDRGIKDIREEGLTLLGLIGIKDPCRPGVKNAVNNCQQAGVNVKMITGDNIFTAKAIATECGILHPNQDTSEAVIEGEVFRNLSVEERLNKVEKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFTSVATVLKWGRCVYNNIQKFIQFQLTVNVAALAINFVAAISAGEVPLTAVQLLWVNLIMDTLGALALATEKPTRELLDKPPVGRSEPLITNIMWRNLLAQALYQITILLTLQFKGEAIFGVSSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFQGIQKNRLFLGIIGITIVLQVLMVEFLKKFADTERLNWGQWGACILIAAISWPIGWVVKFIPVPERPLLSFLNLKKQ | 749 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5944g00001 | 749 | PRINTS | H+-transporting ATPase (proton pump) signature | 330 | 348 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Pral5944g00001 | 749 | PRINTS | H+-transporting ATPase (proton pump) signature | 478 | 494 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Pral5944g00001 | 749 | PRINTS | H+-transporting ATPase (proton pump) signature | 510 | 535 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Pral5944g00001 | 749 | FunFam | Calcium-transporting ATPase | 495 | 737 | - | - | |
| Pral5944g00001 | 749 | Gene3D | - | 495 | 737 | - | - | |
| Pral5944g00001 | 749 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 180 | 384 | IPR023299 | GO:0000166 | |
| Pral5944g00001 | 749 | PRINTS | P-type cation-transporting ATPase superfamily signature | 372 | 383 | - | - | |
| Pral5944g00001 | 749 | PRINTS | P-type cation-transporting ATPase superfamily signature | 478 | 497 | - | - | |
| Pral5944g00001 | 749 | PRINTS | P-type cation-transporting ATPase superfamily signature | 174 | 188 | - | - | |
| Pral5944g00001 | 749 | PRINTS | P-type cation-transporting ATPase superfamily signature | 394 | 404 | - | - | |
| Pral5944g00001 | 749 | PRINTS | P-type cation-transporting ATPase superfamily signature | 502 | 514 | - | - | |
| Pral5944g00001 | 749 | Pfam | haloacid dehalogenase-like hydrolase | 171 | 492 | - | - | |
| Pral5944g00001 | 749 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 176 | 182 | IPR018303 | - | |
| Pral5944g00001 | 749 | FunFam | Calcium-transporting ATPase | 374 | 523 | - | - | |
| Pral5944g00001 | 749 | Pfam | E1-E2 ATPase | 1 | 152 | - | - | |
| Pral5944g00001 | 749 | SFLD | Haloacid Dehalogenase | 156 | 531 | - | - | |
| Pral5944g00001 | 749 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 1 | 735 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Pral5944g00001 | 749 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 24 | 735 | IPR023298 | - | |
| Pral5944g00001 | 749 | SFLD | p-type atpase | 156 | 531 | IPR044492 | - | |
| Pral5944g00001 | 749 | PANTHER | CATION TRANSPORTING ATPASE | 1 | 735 | - | - | |
| Pral5944g00001 | 749 | SUPERFAMILY | HAD-like | 172 | 583 | IPR036412 | - | |
| Pral5944g00001 | 749 | Gene3D | - | 379 | 494 | IPR023214 | - | |
| Pral5944g00001 | 749 | Pfam | Cation transporting ATPase, C-terminus | 563 | 733 | IPR006068 | - | |
| Pral5944g00001 | 749 | NCBIfam | HAD-IC family P-type ATPase | 116 | 217 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Pral5944g00001 | 749 | NCBIfam | HAD-IC family P-type ATPase | 450 | 558 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Pral5944g00001 | 749 | SUPERFAMILY | Calcium ATPase, transduction domain A | 1 | 48 | IPR008250 | - | |
| Pral5944g00001 | 749 | Gene3D | - | 219 | 378 | IPR023299 | GO:0000166 | |
| Pral5944g00001 | 749 | Gene3D | - | 4 | 197 | - | - | |
| Pral5944g00001 | 749 | FunFam | Calcium-transporting ATPase | 184 | 379 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5944g00001 | Pral-Chr5944 | 12824 | 17713 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5944g00001 | 1 | 749 | Primary Pumps ATPases | AT3G22910 | 72.739 | 0.0 | 1053 |