Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5939g00006 ATGGCAGCCAATTTAGGAGTTGTAACTGGAAAACATTTAGCAGAGCATTGTAGAACTGAGTATCCTCGGTCAACAAACTTCATCTTATGGGTTATTGCTGAAATTGCCATAGTGGCTTGTGACATTCCTGAAGTGATCGGAACAGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTTTAACAGGGCTCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGGTGAGGAAACTTGAGTTCTTGATTGCATTTCTGGTGTTTACAATTGCTGCGTGCTTTTTTGCTGAACTTGGATATGCGAAGCCTGATGCTAAAGAAGTTCTGGAGGGTCTTTTTGTACCGAAACTCAAAGGGAGTGGTGCTACGGGTCTTGCAATTTCACTCCTCGGGGCTATGGTTATGCCGCACAATCTCTTCCTCCACTCGGCATTGGTGCTCTCTAGAAAAATACCACGATCAGTTCATGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTTTGGTGGCTTTCCTCATAAATGTTTCTGTCATCTCTGTGAGTGGCGCAGTTTGCAATTCTTCGAATTTGAATGCAGAAGATCAACAGAGCTGTCAGGATTTGGACTTGAACAAAGCCTCCTTTCTGCTAAAAAATGTACTGGGTAAATGGAGTTCAAAACTGTTTGCAGTTGCTTTGCTTGCTTCGGGTCAAAGTTCTACGATAACAGGAACATATGCAGGGCAATATGTCATGCAGGGATTTCTTGACTTACGGCTGAAACCATGGATTCGAAATTTCTTAACTCGCTGTTTAGCCATAGTCCCTAGTTTAATTGTTGCGGTCATTGGTGGCTCTGCTGGGGCAGGGAAGCTCATAATTATTGCATCAATGATCTTATCATTTGAGCTTCCTTTTGCTTTGATTCCTCTCCTCAAGTTCACTAGCAGCAAAACCAAGATGGGCACTCATGCCAACTCATTCACGATATCGGTTTTGACATGGATCATCGGTTCGCTGATAATGGCAATAAATATATACTACTTACTGACCGGGTTCGTCAAGTTGCTTCTTCATAGTGAGCTGGAGATTGTGGGTAAGGTGTTTGTGGGGATTTTAGGGTTTTCAGCCATAGCAATATATTTGGCTGGGATTGCTTATCTGGTGTTTCGCAAGAACAAGAAGGCAACTCACCTTCTGTCACTAACAACACCTGAAAGTAGGCAAATGGAAAATGAACAAGGCAATGGATCAATGTATTGCCTCCCAAGAGAAGATATAATTAGCATGCAATTACCTCAGAGAAGTAGCTTAACTGATCTCTGA 1341 0.4228 MAANLGVVTGKHLAEHCRTEYPRSTNFILWVIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGVRKLEFLIAFLVFTIAACFFAELGYAKPDAKEVLEGLFVPKLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVHGIKEACRFYMIESAFALLVAFLINVSVISVSGAVCNSSNLNAEDQQSCQDLDLNKASFLLKNVLGKWSSKLFAVALLASGQSSTITGTYAGQYVMQGFLDLRLKPWIRNFLTRCLAIVPSLIVAVIGGSAGAGKLIIIASMILSFELPFALIPLLKFTSSKTKMGTHANSFTISVLTWIIGSLIMAINIYYLLTGFVKLLLHSELEIVGKVFVGILGFSAIAIYLAGIAYLVFRKNKKATHLLSLTTPESRQMENEQGNGSMYCLPREDIISMQLPQRSSLTDL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5939g00006 446 PRINTS Natural resistance-associated macrophage protein signature 242 261 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00006 446 PRINTS Natural resistance-associated macrophage protein signature 132 155 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00006 446 PRINTS Natural resistance-associated macrophage protein signature 29 55 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00006 446 PRINTS Natural resistance-associated macrophage protein signature 302 321 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00006 446 PRINTS Natural resistance-associated macrophage protein signature 82 103 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00006 446 PRINTS Natural resistance-associated macrophage protein signature 57 76 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00006 446 PRINTS Natural resistance-associated macrophage protein signature 270 287 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00006 446 NCBIfam Nramp family divalent metal transporter 3 323 - -
Pral5939g00006 446 Pfam Natural resistance-associated macrophage protein 1 332 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00006 446 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 1 402 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00006 446 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 2 326 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5939g00006 Pral-Chr5939 28753 32446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5939g00006 1 440 Inorganic Solute Cotransporters AT1G15960 79.186 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5939g00006 K21398 - qsa:O6P43_027942 753.051