Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5939g00004 ATGGCTGTCACAGGTTCAGCATCTAGACAGCCGCAATTCATTTCGAGCACTGGAAACCGAAGCTCTTCCGATGCTCCTCTTATCGAAAACTCAGACACTGATCAAATTGTCGTCCCTGATAAAACAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTTTCTATTGCATATATAGACCCAGGAAACTTTGAAACGGATCTTCAGTCAGGGGCACAATATAAATATGAGTTACTTTGGATCATATTGGTGGCCTCTTGTGCTGCTCTTATAATTCAATCAATGGCAGCCAATTTAGGAGTTGTAACTGGAAAACATTTAGCAGAGCATTGTAGAACTGAGTATCCTCGGTCAACAAACTTCATCTTATGGGTTATTGCTGAAATTGCCATAGTGGCTTGTGACATTCCTGAAGTGATCGGAACAGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTTTAACAGGGCTCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGGTGAGGAAACTTGAGTTCTTGATTGCATTTCTGGTGTTTACAATTGCTGCGTGCTTTTTTGCTGAACTTGGATATGCGAAGCCTGATGCTAAAGAAGTTCTGGAGGGTCTTTTTGTACCGAAACTCAAAGGGAGTGGTGCTACGGGTCTTGCAATTTCACTCCTCGGGGCTATGGTTATGCCGCACAATCTCTTCCTCCACTCGGCATTGGTGCTCTCTAGAAAAATACCACGATCAGTTCATGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTTTGGTGGCTTTCCTCATAAATGTTTCTGTCATCTCTGTGAGTGGCGCAGTTTGCAATTCTTCGAATTTGAATGCAGAAGATCAACAGAGCTGTCAGGATTTGGACTTGAACAAAGCCTCCTTTCTGCTAAAAAATGTACTGGGTAAATGGAGTTCAAAACTGTTTGCAGTTGCTTTGCTTGCTTCGGGTCAAAGTTCTACGATAACAGGAACATATGCAGGGCAATATGTCATGCAGGGATTTCTTGACTTACGGCTGAAACCATGGATTCGAAATTTCTTAACTCGCTGTTTAGCCATAGTCCCTAGTTTAATTGTTGCGGTCATTGGTGGCTCTGCTGGGGCAGGGAAGCTCATAATTATTGCATCAATGATCTTATCATTTGAGCTTCCTTTTGCTTTGATTCCTCTCCTCAAGTTCACTAGCAGCAAAACCAAGATGGGCACTCATGCCAACTCATTCACGATATCGGTTTTGACATGGATCATCGGTTCGCTGATAATGGCAATAAATATATACTACTTACTGACCGGGTTCGTCAAGTTGCTTCTTCATAGTGAGCTGGAGATTGTGGGTAAGGTGTTTGTGGGGATTTTAGGGTTTTCAGCCATAGCAATATATTTGGCTGGGATTGCTTATCTGGTGTTTCGCAAGAACAAGAAGGCAACTCACCTTCTGTCACTAACAACACCTGAAAGTAGGCAAATGGAAAATGAACAAGGCAATGGATCAATGTATTGCCTCCCAAGAGAAGATATAATTAGCATGCAATTACCTCAGAGAAGTAGCTTAACTGATCTCTGA 1632 0.421 MAVTGSASRQPQFISSTGNRSSSDAPLIENSDTDQIVVPDKTSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSMAANLGVVTGKHLAEHCRTEYPRSTNFILWVIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGVRKLEFLIAFLVFTIAACFFAELGYAKPDAKEVLEGLFVPKLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVHGIKEACRFYMIESAFALLVAFLINVSVISVSGAVCNSSNLNAEDQQSCQDLDLNKASFLLKNVLGKWSSKLFAVALLASGQSSTITGTYAGQYVMQGFLDLRLKPWIRNFLTRCLAIVPSLIVAVIGGSAGAGKLIIIASMILSFELPFALIPLLKFTSSKTKMGTHANSFTISVLTWIIGSLIMAINIYYLLTGFVKLLLHSELEIVGKVFVGILGFSAIAIYLAGIAYLVFRKNKKATHLLSLTTPESRQMENEQGNGSMYCLPREDIISMQLPQRSSLTDL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5939g00004 543 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00004 543 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00004 543 NCBIfam Nramp family divalent metal transporter 52 420 - -
Pral5939g00004 543 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 23 499 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00004 543 MobiDBLite consensus disorder prediction 1 27 - -
Pral5939g00004 543 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00004 543 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00004 543 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00004 543 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00004 543 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00004 543 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00004 543 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00004 543 Hamap Divalent metal cation transporter MntH [mntH]. 32 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5939g00004 Pral-Chr5939 28753 33867 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5939g00004 15 537 Inorganic Solute Cotransporters AT1G15960 79.619 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5939g00004 K21398 - qsa:O6P43_027942 926.776