Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5939g00003 ATGTGGGCAGAAAGGAACAAGAGAGGAGGGAATATGGCTGTCACAGGTTCAGCATCTAGACAGCCGCAATTCATTTCGAGCACTGGAAACCGAAGCTCTTCCGATGCTCCTCTTATCGAAAACTCAGACACTGATCAAATTGTCGTCCCTGATAAAACAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTTTCTATTGCATATATAGACCCAGGAAACTTTGAAACGGATCTTCAGTCAGGGGCACAATATAAATATGAGTTACTTTGGATCATATTGGTGGCCTCTTGTGCTGCTCTTATAATTCAATCAATGGCAGCCAATTTAGGAGTTGTAACTGGAAAACATTTAGCAGAGCATTGTAGAACTGAGTATCCTCGGTCAACAAACTTCATCTTATGGGTTATTGCTGAAATTGCCATAGTGGCTTGTGACATTCCTGAAGTGATCGGAACAGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTTTAACAGGGCTCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGGTGAGGAAACTTGAGTTCTTGATTGCATTTCTGGTGTTTACAATTGCTGCGTGCTTTTTTGCTGAACTTGGATATGCGAAGCCTGATGCTAAAGAAGTTCTGGAGGGTCTTTTTGTACCGAAACTCAAAGGGAGTGGTGCTACGGGTCTTGCAATTTCACTCCTCGGGGCTATGGTTATGCCGCACAATCTCTTCCTCCACTCGGCATTGGTGCTCTCTAGAAAAATACCACGATCAGTTCATGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTTTGGTGGCTTTCCTCATAAATGTTTCTGTCATCTCTGTGAGTGGCGCAGTTTGCAATTCTTCGAATTTGAATGCAGAAGATCAACAGAGCTGTCAGGATTTGGACTTGAACAAAGCCTCCTTTCTGCTAAAAAATGTACTGGGTAAATGGAGTTCAAAACTGTTTGCAGTTGCTTTGCTTGCTTCGGGTCAAAGTTCTACGATAACAGGAACATATGCAGGGCAATATGTCATGCAGGGATTTCTTGACTTACGGCTGAAACCATGGATTCGAAATTTCTTAACTCGCTGTTTAGCCATAGTCCCTAGTTTAATTGTTGCGGTCATTGGTGGCTCTGCTGGGGCAGGGAAGCTCATAATTATTGCATCAATGATCTTATCATTTGAGCTTCCTTTTGCTTTGATTCCTCTCCTCAAGTTCACTAGCAGCAAAACCAAGATGGGCACTCATGCCAACTCATTCACGATATCGGTTTTGACATGGATCATCGGTTCGCTGATAATGGCAATAAATATATACTACTTACTGACCGGGTTCGTCAAGTTGCTTCTTCATAGTGAGCTGGAGATTGTGGGTAAGGTGTTTGTGGGGATTTTAGGGTTTTCAGCCATAGCAATATATTTGGCTGGGATTGCTTATCTGGTGTTTCGCAAGAACAAGAAGGCAACTCACCTTCTGTCACTAACAACACCTGAAAGTAGGCAAATGGAAAATGAACAAGGCAATGGATCAATGTATTGCCTCCCAAGAGAAGATATAATTAGCATGCAATTACCTCAGAGAAGTAGCTTAACTGATCTCTGA 1665 0.4222 MWAERNKRGGNMAVTGSASRQPQFISSTGNRSSSDAPLIENSDTDQIVVPDKTSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSMAANLGVVTGKHLAEHCRTEYPRSTNFILWVIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGVRKLEFLIAFLVFTIAACFFAELGYAKPDAKEVLEGLFVPKLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVHGIKEACRFYMIESAFALLVAFLINVSVISVSGAVCNSSNLNAEDQQSCQDLDLNKASFLLKNVLGKWSSKLFAVALLASGQSSTITGTYAGQYVMQGFLDLRLKPWIRNFLTRCLAIVPSLIVAVIGGSAGAGKLIIIASMILSFELPFALIPLLKFTSSKTKMGTHANSFTISVLTWIIGSLIMAINIYYLLTGFVKLLLHSELEIVGKVFVGILGFSAIAIYLAGIAYLVFRKNKKATHLLSLTTPESRQMENEQGNGSMYCLPREDIISMQLPQRSSLTDL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5939g00003 554 PRINTS Natural resistance-associated macrophage protein signature 410 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00003 554 PRINTS Natural resistance-associated macrophage protein signature 190 211 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00003 554 PRINTS Natural resistance-associated macrophage protein signature 137 163 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00003 554 PRINTS Natural resistance-associated macrophage protein signature 165 184 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00003 554 PRINTS Natural resistance-associated macrophage protein signature 378 395 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00003 554 PRINTS Natural resistance-associated macrophage protein signature 350 369 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00003 554 PRINTS Natural resistance-associated macrophage protein signature 240 263 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00003 554 MobiDBLite consensus disorder prediction 1 38 - -
Pral5939g00003 554 Pfam Natural resistance-associated macrophage protein 78 440 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00003 554 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 57 434 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00003 554 NCBIfam Nramp family divalent metal transporter 63 431 - -
Pral5939g00003 554 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 34 510 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00003 554 Hamap Divalent metal cation transporter MntH [mntH]. 43 466 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral5939g00003 554 MobiDBLite consensus disorder prediction 12 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5939g00003 Pral-Chr5939 28753 36179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5939g00003 26 548 Inorganic Solute Cotransporters AT1G15960 79.619 0.0 862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5939g00003 K21398 - qsa:O6P43_027942 926.776