Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5937g00009 ATGGACCTCCAAATATCAGAGCCATGTTCATCTGAAAATTTGAACATCATCTCATTTTCAGATGCTCCAGCATGCCCAAAACCCTCAATGGATTGCCAAACTGAGAAGAGAAGCACTCAAAAAGAAGATCAAACACACCCACAGGACTCAGCTCGTCCTCTTCTGCTGAATCTAAATCTCTCTAACGACGATTCAGCGGATGGATCAAATCCAGAACTCAACCTCATCAATTGTCTTGATGCCAAGTCGTCCGTAAATTCCTTAGAATCTTCTCACGACTTGGAACCCCGGATCTTCTCATGCAACTACTGCCAGAGAAAATTTTATAGTTCACAGGCCCTTGGAGGACATCAGAATGCGCACAAGCGTGAGAGGACTTTAGCAAAAAGAGGACATAAAGTTGGAGCTGCAGTTTCAGTAGAATTTGGACAGAGGTACAGTAGCATGGCTTCTCTGCCTTTGCATGGTTCATATAACAGATCACTTGGGATTCAAGCACATTCTATGATTCACAAGCCTTCTCATCAAGCTTCCACTCTTGGTTTACCGCGTTTCCATGGTCAAAATTCCTGGTGGAGGCAGCCTTTAGATTCACAACCAGCAATTGGAAAGCTTCCTTCTGGAAAAGTTCATATTGGAGATGAAACTGACTCTTCCTTTTCGGGTGGAGTTTCGAGGTTAGCAAAGTTTTCTCCAAATATGGTGGTGAAAGAGGGAATTGGAGCTTACTGGTTGGGAAGTGTTACTCATGTAAAATCTAAACAAGAAGAGCTGCAGAAGCTTGACTTGTCCCTCAAACTCTAA 804 0.4328 MDLQISEPCSSENLNIISFSDAPACPKPSMDCQTEKRSTQKEDQTHPQDSARPLLLNLNLSNDDSADGSNPELNLINCLDAKSSVNSLESSHDLEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKVGAAVSVEFGQRYSSMASLPLHGSYNRSLGIQAHSMIHKPSHQASTLGLPRFHGQNSWWRQPLDSQPAIGKLPSGKVHIGDETDSSFSGGVSRLAKFSPNMVVKEGIGAYWLGSVTHVKSKQEELQKLDLSLKL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5937g00009 267 MobiDBLite consensus disorder prediction 21 51 - -
Pral5937g00009 267 Gene3D Classic Zinc Finger 77 147 - -
Pral5937g00009 267 FunFam Zinc finger protein 2 77 145 - -
Pral5937g00009 267 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Pral5937g00009 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Pral5937g00009 267 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 267 IPR044246 GO:0009788
Pral5937g00009 267 MobiDBLite consensus disorder prediction 34 48 - -
Pral5937g00009 267 SUPERFAMILY beta-beta-alpha zinc fingers 96 126 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5937g00009 Pral-Chr5937 36933 38178 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5937g00009 1 267 C2H2 Transcription Factor Family AT5G10970 41.429 4.70e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5937g00009 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5937g00009 - - qsa:O6P43_017957 307.76