LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5930g00002	ATGCATTCATCTTTCATTCTTCATCGCTTCCGCAAGGTGAGAAAAAACAGCATGCAGCCTCAACTACTGCAACAAAAGCCTCTGTTCTTCTTCTTATTGAGCTTCATAATCTGGTCATGGTGGACTCTTGACGGCGTCGTTTCGGACCCTCAGACGAATCTAGTGCGACTATGGTGTGACCCCCAAGACGGCGACAACGATGGGTCCATCATGAAGGAGATCCTTGACGAAACGTTTGGAGATCTGAGAGCTCAGATCCAAAACCAAAACAAACACTTCGCCAGAGCTCAATCAGTGAAGGCTAACATCCCCGTTTATGGCCTTTTTCAGTGCAGAAACTACCTCTCCCTCGCCGATTGCCTCGCTTGCTTTGACGTCGCCGCCGTAAACATCCACAACTGCTCCGCCAGGGCATACGCTGCCCGTCTTGTCTACGACGGCTGCTTCCTCAGGTATGAGAACAGTCAAAGCTTCGACTGGGCCACCGATAGTTGGAGCAACGTAGTATGTGGGAATCAGACAATAAAAGATTCTCCGGCTCTTTCTTCAACTGTGCAACAAGTGCTAAGGAATCTAGGCAAAGCAACCCCAAGAATCCCTGGTTCCTATGTGGCCACTAAGACGCCTGTCCCTAACAGTAATGATCTGAATATTTATGGCTTGGCTCAATGTGTTGACACTGTCCCACAAAAGGGGTGCCAGACTTGTATTAACATTGCTTTAAGACACTTTCAGAATTGCCTCGCCAACACAGATGCTAAGACTTACGATATTGGCTGTTTCGTGAGATACTCCACCACTGCCTTCTTTGCTCTTAATCAAACCGTTGATATCAACCCCTTCTTGAAACAAGAACAAGGTTCAAGCAATAAGGGGGCCATCATTGGCATTGTTATTGGATGTTTAGTGCTTTTCTTTATCTTCCTTATTGCATTATTTGCGTGGATTAGATCACGAAAAACCCAAAAGAGAGTTCCCAGAGGAGATATCACTGGAATTAGCATGTTGAAAGCCGCGGTTAATTACAATTATGGGGATTTGAGGTCTGCAACAAAAAATTTCAGCATTGAAAATAAACTTGGAGAAGGCGGATTTGGTGCAGTATATAAGGGTACCTTGAAGAATGGAAAAATAGTTGCGGTGAAGAAATTAACTTCACGACAATCCAAGAGGGTAGAAGAAGAATTTGAGAGCGAAGTGAAACTTATACGTAACGTTCATCATCGGAATCTTGTCCGGCTTCTTGGATGTTGCAGTAAAGGCAATGAGAGAATTCTGGTTTATGAATACATGGAAAAGACCAGTCTTGACAGATTCTTATTTGGAAAAAATAAAGGTTCTCTTGATTGGAAGCAACGATATAATATAGTTTTAGGAACAGCAAGAGGTTTGGTTTATTTACACGAGGAGTTTCATGTTCGTATTATACATAGAGACATAAAGACTAACAATATCCTCTTGGATAATGATTTACAACCTAAAATCGCTGATTTTGGCTTAGCAAGACTCTTACCTGAGGACAAGACTCATCTTAACACAAGATTTGCAGGAACATTAGGATATACAGCCCCTGAATATGCAATTCATGGACAGCTATCAGAAAAAGTTGATGTATATAGTTATGGTGTTATAATCCTAGAAATTGTTAGTGGTAAAAGAAACAATGAATTAAATGCCGATGGTGCTGATGAAGGCGGATTCCTCCTTCAAAAAGCTTGGAACTTGTATAAGAGAGGCATACATTTAGAATTGGTGGATGAGACCTTAGAACCTAATGATTATGATGCAGAAGAAGTGAAGAAAATAATAGAGATTGGTTTACTTTGCACACAAGCATCTGTAGGAATGAGGCCAAAGATGTCTGAAGTAGTTGCATTGCTCCAACAAAATGATTTATCAGAGGATATGAGACCTACTATGCCTATTTTGATTGAAATTGGTTAA	1944	0.4146	MHSSFILHRFRKVRKNSMQPQLLQQKPLFFFLLSFIIWSWWTLDGVVSDPQTNLVRLWCDPQDGDNDGSIMKEILDETFGDLRAQIQNQNKHFARAQSVKANIPVYGLFQCRNYLSLADCLACFDVAAVNIHNCSARAYAARLVYDGCFLRYENSQSFDWATDSWSNVVCGNQTIKDSPALSSTVQQVLRNLGKATPRIPGSYVATKTPVPNSNDLNIYGLAQCVDTVPQKGCQTCINIALRHFQNCLANTDAKTYDIGCFVRYSTTAFFALNQTVDINPFLKQEQGSSNKGAIIGIVIGCLVLFFIFLIALFAWIRSRKTQKRVPRGDITGISMLKAAVNYNYGDLRSATKNFSIENKLGEGGFGAVYKGTLKNGKIVAVKKLTSRQSKRVEEEFESEVKLIRNVHHRNLVRLLGCCSKGNERILVYEYMEKTSLDRFLFGKNKGSLDWKQRYNIVLGTARGLVYLHEEFHVRIIHRDIKTNNILLDNDLQPKIADFGLARLLPEDKTHLNTRFAGTLGYTAPEYAIHGQLSEKVDVYSYGVIILEIVSGKRNNELNADGADEGGFLLQKAWNLYKRGIHLELVDETLEPNDYDAEEVKKIIEIGLLCTQASVGMRPKMSEVVALLQQNDLSEDMRPTMPILIEIG	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5930g00002	647	ProSiteProfiles	Protein kinase domain profile.	354	643	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5930g00002	647	Gene3D	Phosphorylase Kinase; domain 1	316	430	-	-
	Pral5930g00002	647	Gene3D	Transferase(Phosphotransferase) domain 1	431	639	-	-
	Pral5930g00002	647	Pfam	Salt stress response/antifungal	174	266	IPR002902	-
	Pral5930g00002	647	Pfam	Salt stress response/antifungal	72	154	IPR002902	-
	Pral5930g00002	647	CDD	STKc_IRAK	360	629	-	-
	Pral5930g00002	647	ProSitePatterns	Protein kinases ATP-binding region signature.	360	383	IPR017441	GO:0005524
	Pral5930g00002	647	FunFam	Cysteine-rich receptor-like protein kinase 2	431	635	-	-
	Pral5930g00002	647	Gene3D	-	163	269	IPR038408	-
	Pral5930g00002	647	Gene3D	-	53	157	IPR038408	-
	Pral5930g00002	647	SUPERFAMILY	Protein kinase-like (PK-like)	337	627	IPR011009	-
	Pral5930g00002	647	ProSiteProfiles	Gnk2-homologous domain profile.	163	269	IPR002902	-
	Pral5930g00002	647	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	475	487	IPR008271	GO:0004672\|GO:0006468
	Pral5930g00002	647	FunFam	Cysteine-rich receptor-like protein kinase 2	319	430	-	-
	Pral5930g00002	647	ProSiteProfiles	Gnk2-homologous domain profile.	52	157	IPR002902	-
	Pral5930g00002	647	Pfam	Protein kinase domain	355	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5930g00002	647	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	107	643	-	-
	Pral5930g00002	647	SMART	serkin_6	354	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5930g00002	Pral-Chr5930	18112	22797	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5930g00002	18	645	Receptor kinase-like Gene Family	AT1G70520	36.463	2.14e-118	365

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral5930g00002		Pkinase	1e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5930g00002	-		-	gmx:100813585	746.117