LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5928g00003	ATGCTGCAACAAAACCCCTTGTTCCTCACCTTCTTGTTGAGCTTCACAATCTGGTCATGGGGGACTCTTGACGGCGTCGTTTCAGAGCCACAGCTCAGTGAAGTGAAATCAGGTTGCAGCCCCTATAACGTCAGTGACGTGACCATCTTCAACAAGAACCTAAACGTGACGATGCGAAGCCTGAGAGAGCAGGTCAGCAACCAGAGCAAATACTTCGCCACGGCGCAGGCAGTGAAGGGTAACAATCCGGCGTACGGCGTTTTTCAGTGCAGGAACTATCTCTCCATCAAAGACTGCCTCGCTTGCTTCGACTTCGCCGCCTTCCAAATAAAAAATAACTGCTCCGTCGCTGCCACCGGTGCCCGTGTCATTTACGAAGGTTGCTTCCTCAGGTATGAGAGCAGTATTTTCTTCGACCAGTCCACAGACGGTGGGAACCATATTGTGTGTGGGAATCGTGTGGCTAAGAACTCCACAGAACTTGCTTCAACTGTGCAGAAAGTGCTAAAGAATCTGGTAGAAGCAATACCAAGAATACCTGGTTTCTTCGCAGCCACTATAACCCCAGTACCTAACAGTAATAATTCAAATATTTACGCCATTGCTCAATGTCTCGAGACTCTCACTCAAAGTGGCTGCCAGGATTGCTTGGAATCTGGGTTCACAAGTTTTCAAATTTGTCTTCCCAGCTCAAATGCTAAGATTTTTTATGCTGGTTGTTTCATGAGATACTCCACTTCTGCATTTTTTGCTGCTAATCAGACCACTAATATCAAGCGCATCTTGAAACCAGGAGATTCAAGCAAGAAGGCCATTATAGGTGGAGTCGTCGGTGGTGCATCTTTTATTTTGGTTCTCCTTGCATTATTTGCTTTGTATAGTCGATCATTGTCCAGAAGGGTCCATAGAGTTGACATTTTGGGAGCAACAGAGTTGAAAGGCCCGGTTAACTATAGGTATAAAGATCTGAAGTCTGCAACAAAAAATTTCAGTAAAGAGAATAAATTAGGAGAAGGAGGTTTTGGAGATGTATACAAGGGTACTCTGAAAAATGGAAAAGTAATTGCTATAAAGAAATTGGATTTAGAGCAATCCAAAAAGATGGAAGAAGATTTTCAAAGTGAAGTGAAGCTAATAAGTAATGTTCATCATCGAAATCTTGTTCGACTTCTCGGGTGTTGCAGTAAGGGTCAAGAGAGATTTCTTGTCTATGAGTATATGAAGAACAACAACGTTGGCCAATTCTTATTTGGTGAACATAAAGGCTCTCTCAACTGGAAGCAACGTTATGGTATAATTTTAGGCACTGCACGGGGTTTGGCATATCTTCATGAGGGGTTCCACGTTTGCATTATGCATAGAGATATAAAGCCTAGCAACATCCTTTTGGATGATGATTTCCAACCTAAAATTGCTGATTTCGGGTTGGCAAGGCTTTTGCCAAGGGACCAATCTCATCTCAACACAAAATTTGCAGGAACAATGGGATACATTGCACCAGAGTATATAATGCATGGACAATTATCTGAGAAGGTTGATACCTATTGCTACGGTGTTGTGGTCTTAGAAATCATAAGTGGGCAGAAGAGTGGTGAATTGAAGGATGATGATGAAGGCCAATTCCTCCTTCAAAGAGCTTGGAAACTATATGAGAGAGGAATGCACATAGAGTTTGTGGATGAAACCTTAGATCCAAACGAGTACGATGCAGAAGAAGTGAAGAAAACCATAGAGATCGGATTGCTTTGCACGCAAGCATCTCCCGCAGCAAGGCCAACAATGTTTGAAGTTGTTGATATGCTGGAAAGCAAGGGTGGCTTGATAGATCACAAGCGACCCACTATGCCTGTCTATGTCGATCCTAATTTGAGGCCATGA	1878	0.4318	MLQQNPLFLTFLLSFTIWSWGTLDGVVSEPQLSEVKSGCSPYNVSDVTIFNKNLNVTMRSLREQVSNQSKYFATAQAVKGNNPAYGVFQCRNYLSIKDCLACFDFAAFQIKNNCSVAATGARVIYEGCFLRYESSIFFDQSTDGGNHIVCGNRVAKNSTELASTVQKVLKNLVEAIPRIPGFFAATITPVPNSNNSNIYAIAQCLETLTQSGCQDCLESGFTSFQICLPSSNAKIFYAGCFMRYSTSAFFAANQTTNIKRILKPGDSSKKAIIGGVVGGASFILVLLALFALYSRSLSRRVHRVDILGATELKGPVNYRYKDLKSATKNFSKENKLGEGGFGDVYKGTLKNGKVIAIKKLDLEQSKKMEEDFQSEVKLISNVHHRNLVRLLGCCSKGQERFLVYEYMKNNNVGQFLFGEHKGSLNWKQRYGIILGTARGLAYLHEGFHVCIMHRDIKPSNILLDDDFQPKIADFGLARLLPRDQSHLNTKFAGTMGYIAPEYIMHGQLSEKVDTYCYGVVVLEIISGQKSGELKDDDEGQFLLQRAWKLYERGMHIEFVDETLDPNEYDAEEVKKTIEIGLLCTQASPAARPTMFEVVDMLESKGGLIDHKRPTMPVYVDPNLRP	625

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5928g00003	625	ProSiteProfiles	Gnk2-homologous domain profile.	143	249	IPR002902	-
	Pral5928g00003	625	SUPERFAMILY	Protein kinase-like (PK-like)	314	602	IPR011009	-
	Pral5928g00003	625	Gene3D	-	32	137	IPR038408	-
	Pral5928g00003	625	Gene3D	-	146	249	IPR038408	-
	Pral5928g00003	625	Gene3D	Transferase(Phosphotransferase) domain 1	407	610	-	-
	Pral5928g00003	625	FunFam	Cysteine-rich receptor-like protein kinase 2	407	608	-	-
	Pral5928g00003	625	SMART	serkin_6	330	601	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5928g00003	625	ProSitePatterns	Protein kinases ATP-binding region signature.	336	359	IPR017441	GO:0005524
	Pral5928g00003	625	ProSiteProfiles	Protein kinase domain profile.	330	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5928g00003	625	Pfam	Salt stress response/antifungal	43	134	IPR002902	-
	Pral5928g00003	625	Pfam	Salt stress response/antifungal	157	246	IPR002902	-
	Pral5928g00003	625	Pfam	Protein kinase domain	330	598	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5928g00003	625	FunFam	Cysteine-rich receptor-like protein kinase 2	298	406	-	-
	Pral5928g00003	625	ProSiteProfiles	Gnk2-homologous domain profile.	32	137	IPR002902	-
	Pral5928g00003	625	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	86	620	-	-
	Pral5928g00003	625	Gene3D	Phosphorylase Kinase; domain 1	294	406	-	-
	Pral5928g00003	625	CDD	STKc_IRAK	336	602	-	-
	Pral5928g00003	625	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	451	463	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5928g00003	Pral-Chr5928	44645	62469	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5928g00003	6	620	Receptor kinase-like Gene Family	AT1G70520	36.551	5.56e-127	387

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral5928g00003		Pkinase	1.7e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5928g00003	-		-	gmx:100813585	805.053