Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5926g00017 ATGATAACCGGAGAACAGGTCGATGGCCAGCAAACCCAGTCATCATCATCATCATCTTCTTCTTCTTCAATTGATAGCAGTAATTACCCTTCTGGGACTGTGAAACCTGCAGCTTCTTCATCTTCTTCGTGTCTCTCAAGTGTTTGTAGAAATACTAACAGTTCCAGAACTGATCTGATCACTGACCTGAGGCTTGGTCTTACCATTTCTCCTTCTCAACCTGGCTTTTCCAATTCAAATCCCAGGTCAAGGAATCAAACTTCAGATTGGCCTCCAATCAAGTCCATACTGAGAAGCACTCTTGTGGAGAAACAAAACCAGTGGAGCCAAGGGCCTTCCTTATTTGTCAAAGTGTACATGGAAGGCATACCAATTGGTAGAAAATTGAACCTTCTGGCACACCATAGTTATGATGGGCTTGTCAGAGCTTTAGGCCACATGTTCAGGACCACCATTCTCTGCCCTAATTCCCAACCACTTCATTCTGGAAATTTTCATGTGTTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCATGGGAGATGTTCTTGACCAGTGTGAAAAGGCTGAAGATCACCAGAGCAGACAGATGCTAG 612 0.4428 MITGEQVDGQQTQSSSSSSSSSSIDSSNYPSGTVKPAASSSSSCLSSVCRNTNSSRTDLITDLRLGLTISPSQPGFSNSNPRSRNQTSDWPPIKSILRSTLVEKQNQWSQGPSLFVKVYMEGIPIGRKLNLLAHHSYDGLVRALGHMFRTTILCPNSQPLHSGNFHVLTYEDQEGDWMMVGDVPWEMFLTSVKRLKITRADRC 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5926g00017 203 SUPERFAMILY CAD & PB1 domains 105 197 - -
Pral5926g00017 203 ProSiteProfiles PB1 domain profile. 113 202 IPR000270 GO:0005515
Pral5926g00017 203 MobiDBLite consensus disorder prediction 70 91 - -
Pral5926g00017 203 Gene3D - 108 203 - -
Pral5926g00017 203 Pfam AUX/IAA family 64 199 IPR033389 -
Pral5926g00017 203 MobiDBLite consensus disorder prediction 1 46 - -
Pral5926g00017 203 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 60 201 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5926g00017 Pral-Chr5926 90973 92346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5926g00017 116 203 B3 DNA Binding Superfamily AT2G46530 34.091 1.83e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral5926g00017 AUX_IAA 1.8e-34 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5926g00017 K14484 - gmx:100527448 272.322