Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5923g00003 ATGGGTTCTTCTTTCCTGAACACCCCATATAATCCATGGACGCCTGCAGATGCTGTTCTTCGAGATTGTTCTCAAGGAATCTGCAGCTTCTATTGCCCTCAATGGTGCTCCGTCATTTATCCTCCTCCTCCTTCACCTTCCCTCACGGCCATCGGAGTTGCCGCCACCGCGGGTGACGAAGACTCTTCTTCTTCTTCATTCCGGCTTTCTCCCCTCATAGTCGCTCTCATCGGCATCCTAGCAAGTGCTTTCGTCTTAATCACTTACTACACCATCATCTCTCGATTCTGCACAAGACGAAATCGAATTCACCAAAACGACACCAACCAATGGGTAAACGACAATGACGAGTCTGCGATTCAAGCCTCCTCTTCTTCCGCCAATACCGGCGGCTTAGACGAAGCCATCATCAGATCAATCACAGTCCGTAAGTACAAGAAAGGAGATGGATTAGTCGAAGGTACCGATTGCTCTGTGTGTCTCAGCGAATTTCAAGATTGCGAGAGCTTGAGATTGTTACCTAAATGCAACCACGCGTTTCATCTTCCTTGTATCGACACTTGGTTGAGATCGCATTCGAGTTGTCCTCTATGCAGATCCAATATCGTCATATCCAACACTTGCTCGTCGTCTTCTTCTGGTAATTTACCGAATCAAAGAGAGAATTCTCAGTCCCAGGAGGCTTCGCGAACACACAGCGTGAATGTATCTGCGTTGGAATACCAGTACAGGAACGATACAGTGATAGTGATTCAGGGTTCTGAACAGGAAATTCAGGTCGGTTTTGCAGGGAATTTGGCGGAGAGGAATGGGAATGAATCCAATCAGGGAAGACTGTTGTTGGTTGCTGATATATTGAGGAGCAGTGAAGATGATGACGATGAGGACGAAGAAGTCGAGATTGGAATATCGTCGAAAGAAAATGGGAAAGAAGAGAAGAGGAAAGTGCGATCGGAATGA 960 0.4688 MGSSFLNTPYNPWTPADAVLRDCSQGICSFYCPQWCSVIYPPPPSPSLTAIGVAATAGDEDSSSSSFRLSPLIVALIGILASAFVLITYYTIISRFCTRRNRIHQNDTNQWVNDNDESAIQASSSSANTGGLDEAIIRSITVRKYKKGDGLVEGTDCSVCLSEFQDCESLRLLPKCNHAFHLPCIDTWLRSHSSCPLCRSNIVISNTCSSSSSGNLPNQRENSQSQEASRTHSVNVSALEYQYRNDTVIVIQGSEQEIQVGFAGNLAERNGNESNQGRLLLVADILRSSEDDDDEDEEVEIGISSKENGKEEKRKVRSE 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5923g00003 319 MobiDBLite consensus disorder prediction 302 319 - -
Pral5923g00003 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 207 IPR013083 -
Pral5923g00003 319 PANTHER RING-H2 FINGER PROTEIN ATL16 61 275 IPR044600 GO:0016567|GO:0016740
Pral5923g00003 319 MobiDBLite consensus disorder prediction 209 231 - -
Pral5923g00003 319 FunFam RING-H2 finger protein ATL54 132 205 - -
Pral5923g00003 319 SUPERFAMILY RING/U-box 146 205 - -
Pral5923g00003 319 SMART ring_2 157 198 IPR001841 -
Pral5923g00003 319 Pfam Ring finger domain 156 199 IPR001841 -
Pral5923g00003 319 MobiDBLite consensus disorder prediction 289 319 - -
Pral5923g00003 319 CDD RING-H2_EL5-like 156 199 - -
Pral5923g00003 319 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5923g00003 Pral-Chr5923 50805 52149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5923g00003 11 313 C3H Transcription Factor Family AT3G03550 45.092 1.34e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5923g00003 - - pcin:129291142 530.791