Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5920g00001 ATGGGAAGTGCACCATTACCACCAGGTTTTCGTTTCCACCCCACAGACGAAGAGCTGGTCGGATATTATCTAAAGAGAAAAGTAGAGGGGCTTGAAATAGAGCTTGAGGTTATCCCAGTCATTGATTTATACAAATTTGATCCATGGGAATTGCCAGAGAAATCATTCCTACCAAAGAGAGATATGGAGTGGTTTTTCTTTTGTCCACGAGATCGAAAGTGGCCAAATGGATCGCGAACAAATAGAGCTACCAAAACTGGGTACTGGAAAGCTACTGGAAAAGACAGAAACATAGTGTGTCAATCAACTCCATTCACTGTTACAGGATGCAGAAAGACCCTTGTTTTTTATCGCGGAAGAGCTCCACTTGGAGATCGAACCGAGTGGGTCATGTATGAATATCGACTCAACAATGACTCTGATCTCTCATCACCTTGTTTTCAGGGTGGTTTTGCATTGTGCAGAGTGATAAAGAAGAATGAGAAGGCCAGGAGTTCGCAAGAAGAACAAAAGGGTAAGGCTGCAGGAAGAAGTTGCAACAGTGGTAATGAAGAAGCTTCAATGAAGACTTCACACCATGTGGCTCCAACAATGGCAGAGCTTGAGCAAGCTTCTTCCTTGGAGTCCATAAACCCTTCACATTTTGATGTCTCTCCTGAATTAATTCTAGATTCTTCTATGGTACTAGGAATAAAGCAGGGAACTTCATATGCATTAGCTAAGTTTCAGACATATATGAGTTCTGACTTCACTTGTTTACTCCTCCAACTCTGCAGGACTATTGCTCTGAAGTACAAGATTCCATGTCTGGATACTTTCCACAGTACGACTTATCATGTTCAATGA 846 0.4208 MGSAPLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDLYKFDPWELPEKSFLPKRDMEWFFFCPRDRKWPNGSRTNRATKTGYWKATGKDRNIVCQSTPFTVTGCRKTLVFYRGRAPLGDRTEWVMYEYRLNNDSDLSSPCFQGGFALCRVIKKNEKARSSQEEQKGKAAGRSCNSGNEEASMKTSHHVAPTMAELEQASSLESINPSHFDVSPELILDSSMVLGIKQGTSYALAKFQTYMSSDFTCLLLQLCRTIALKYKIPCLDTFHSTTYHVQ 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5920g00001 281 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Pral5920g00001 281 Gene3D NAC domain 15 165 IPR036093 GO:0003677|GO:0006355
Pral5920g00001 281 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 196 - -
Pral5920g00001 281 MobiDBLite consensus disorder prediction 172 187 - -
Pral5920g00001 281 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Pral5920g00001 281 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Pral5920g00001 281 FunFam Nac domain-containing protein 86 15 162 - -
Pral5920g00001 281 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5920g00001 Pral-Chr5920 6054 7820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5920g00001 1 226 NAC Transcription Factor Family AT4G17980 60.000 2.58e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral5920g00001 NAM 1.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5920g00001 - - gmx:100796849 340.117