Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5919g00010 ATGGGTTGCACTGTAAGGGAAAAGCACCTCCGAGCGAATCGGAGGCCTCGATCATCTAAGCCCGATATGGATTCCTGTTGTTATCTCGACAAGGCTTCCATCTCCAAATCTGTACTGGAATCAAGCTTGAAGCCTCTGAAAAACCATCTCGCTCTCAACGATTCTTCTCAGAATCTAAATTCCAACTCTAATCCTACCCTTGACCCTAATTTCTCTCTTAATATTGAGGAAACCGGCTGGGGTTACTGCACCGAAGAACAATTAGAAGAAATTCTATTAAAAAACTTGGAATATATATATAATGAAGCTGTATCAAAGCTTGTTGCGTTGGGCTACGACGAGGACGTTGCTATCAAAGCAATATTGCGAAATGGACACTGTTATGGTGGAATGGATGTGCTCACCAATATAGTACAAAATTCGTTGGCTTATTTGAATAGTAACTGTATCAGTACTAATACTAGTAGTAATGGCAATTCGGATGAGTCCGATCCTGTTTTCTCTGACTTGAGGCAGTTGGAGGAGTACTCTCTGGAAGGGATGGTCGGTTTGCTGCAGCAAGTCAGGCCGCATTTGAGTAAAGGCGATGCTATGTGGTGTTTGCTTATGAGTGATCTTCATGTAGGACGGGCAAGTGCTATGGAAATCCCAGTGCTTCCTGCTCCAGGTAATGGTTGTCCAGCTCCTAGTGCCTCTGAGGCCGTTAGCAATTCAGTTGGTGTCTTGGCCCCTGCCCTGTGTAGGTTTCATGGGGGTTGGGGATTTGGAAATGGGGGAGGCTCAGATCTCCCCTTCAATGGGTTCTTCTCTTATACTGCAGAGATGAATTTACAAAGAGATATTGAACTTCCCAAAAGGTTTAATCTTTCTCCTTCAATGAAGTCTTTATTGAAAAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCAAATTCAAAACAATTGCGGACACAGGCTAAGGCCTCTCCAAGCACTTGCAGTTTGTCAAGCATGGAATCTCCAGCTGTATCTGGCACTGATGTCCCAAATGAGCAGTCTGGGGATTCTCAGAATCTGAATAACCATGACGCTGTGAACTCAGTGTTGAGCAAATTCCGTGATTTGAATCTTGATGAGAATCTGGAGTTTGTGACAGAAGATCAGAAAGATGAGGTAATTGTCACTCTATTTCATCAAATTAAGGATCTTGAGAAACAAGTAAAGGAGCGAAAAGATTGGGCCCATCAGAAGGCAATGCAGGCTGCAAGAAAGCTTAGCAATGATTTGACTGAGCTGAAAATGTTGAGGATGGAAAGAGAGGAGACTCAGAGATTGAAGAAAGGGAAACAAGCGCTTGAGGACACAACCGTGAAAAGACTCTCAGAGATGGAGAATGCTTTACGAAAGGCCAGTGGTCAAGTGGACCGTGCTAATGCAGCTGTGAGACGGCTTGAGACAGAGAATGCAGAGATTAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCTGAATCAGTCACAACTTGCATGCAAGCTGCAAAGAGGGAGAAAAAGTGCATGAAGAGGCTTATAGCTTGGGAAAAACAGAAAGCTCAGCTACAGCAAGAGATTTCAGGTGAGAAAGAGAAGATATTGGAGATACAGGAAGAATTGGTTCAGATTAAACAGCGTCAAAAAGATGCCGAGGTCAAGTGGGGGGAGGAGCTGAAGGCTAAAGAGGAAGCCTTAGGATTAGTTGAGGAGGAGCAACGCGCTAAGGAAGCAGCGGAGGCTAATAATAAGAGGAACCATGAAGCTTTGCGCCTGAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTCCTAAGACTGGAGCAGGAGCTGTCACGCTTAAAAGCATCTGCTCTGTCTGCTGAGTTTCAAAATCAATTAAATGCTTCACCTGCAAGTGAGTCTGAAGGTGCAAAGCCCCAGAGAGAGACAATTGCTAAGCTGCTTCAAGAATTAGATAAACTGCAGGCTTTTTCAGATAAAGAAGTAAACTCTGATAGGGAATGCATAATATGCATGAAAGATGAAGTCTCTGTTGTTTTCTTGCCTTGTGCCCACCAAGTTATGTGTGCTACTTGCAGTGATGAGTATGGGAGAAAGGGCAGAGCTGCTTGTCCTTGCTGTCATGTTCCAATTGAGCAGAGGATTCGCGTATTTGGGGCAAGTTCGTAG 2184 0.4418 MGCTVREKHLRANRRPRSSKPDMDSCCYLDKASISKSVLESSLKPLKNHLALNDSSQNLNSNSNPTLDPNFSLNIEETGWGYCTEEQLEEILLKNLEYIYNEAVSKLVALGYDEDVAIKAILRNGHCYGGMDVLTNIVQNSLAYLNSNCISTNTSSNGNSDESDPVFSDLRQLEEYSLEGMVGLLQQVRPHLSKGDAMWCLLMSDLHVGRASAMEIPVLPAPGNGCPAPSASEAVSNSVGVLAPALCRFHGGWGFGNGGGSDLPFNGFFSYTAEMNLQRDIELPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQLRTQAKASPSTCSLSSMESPAVSGTDVPNEQSGDSQNLNNHDAVNSVLSKFRDLNLDENLEFVTEDQKDEVIVTLFHQIKDLEKQVKERKDWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQALEDTTVKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTTCMQAAKREKKCMKRLIAWEKQKAQLQQEISGEKEKILEIQEELVQIKQRQKDAEVKWGEELKAKEEALGLVEEEQRAKEAAEANNKRNHEALRLKIEIDFQRHKDDLLRLEQELSRLKASALSAEFQNQLNASPASESEGAKPQRETIAKLLQELDKLQAFSDKEVNSDRECIICMKDEVSVVFLPCAHQVMCATCSDEYGRKGRAACPCCHVPIEQRIRVFGASS 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5919g00010 727 Pfam Family of unknown function (DUF6592) 95 214 IPR046527 -
Pral5919g00010 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 724 IPR013083 -
Pral5919g00010 727 Coils Coil 453 494 - -
Pral5919g00010 727 Pfam Zinc finger, C3HC4 type (RING finger) 670 718 - -
Pral5919g00010 727 MobiDBLite consensus disorder prediction 315 355 - -
Pral5919g00010 727 Coils Coil 565 592 - -
Pral5919g00010 727 Coils Coil 601 628 - -
Pral5919g00010 727 SMART ring_2 673 712 IPR001841 -
Pral5919g00010 727 CDD RING-HC_MIP1-like 668 722 - -
Pral5919g00010 727 ProSiteProfiles Zinc finger RING-type profile. 673 713 IPR001841 -
Pral5919g00010 727 PANTHER OS05G0141500 PROTEIN 1 722 IPR046934 -
Pral5919g00010 727 MobiDBLite consensus disorder prediction 1 23 - -
Pral5919g00010 727 SUPERFAMILY RING/U-box 661 719 - -
Pral5919g00010 727 Coils Coil 509 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5919g00010 Pral-Chr5919 38001 42543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5919g00010 654 723 C3H Transcription Factor Family AT1G73950 38.571 1.47e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5919g00010 - - gmx:100797917 1046.96