Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5909g00001 ATGACGGATGCTTGCAGAAGATCCTCCATTTTGGGTCAGTCATACAATTCTCTCTACGTCAATCCTCTTACTGAACTCAGGCACAGCCGTAGCTGCAGCGACAGTGGCAGCTTAGCTTCCAAATGTGACAAATGTGAAGATTTCACGCCCAGAGAAGTCTCAACTGATAATAAAGAGAATGTCACGCCCAAGAAGAAAGATGTAACTCGCTTCTGTGATAAGGAAAATTCAGTGCCTGCAAATGGGTCATATTCTTTGCCTAAACACTTCTCAAAGTCCAAGTCTTTATCCACAGATAGGATTTTGAAGCCAAACTCGCTTCAGTTCTGTATGCGAATGAACGAACCTGAAAAGGCTTTTGGGTGCAAGATATGGGATAACTTATGTTCTGAGAATTCGAGCTCTTTAAAGATTTGGGATTTCTCTGATTCAGAGGCAGCCCCAGCTTCTTCCTGGTCAACCTTGCCCAATAAGTCTTTGATCTGTAGACCGTTGCCCATAGATATTGGGAGGTGTTCTTGCATCGTTGTAAAGGAAGCAAAGCCAGAAGGACTATCTGGGGGCGCAATGTATTCGCTTTATACTTATGAAGGTCAGGGTCGCCAGAATAGGAAACTAGCTGTTGCTTACCACAAGAGGCGGAATGGGAGGTCTCAGTTCATTGTAGCTCAGAATGTAAAAGGTCTCTTGTCCAATTCAGACGATAGTTTCCTTGGAACAGTAACGGCTAACCTCATGGGTTCTAAATACCATATTTGGGATCAGGGATATCGTCATAATTCACATGATAAACAGCCAAAACCGCCTCTTGCTGTTGTGATGTTTATACCTACAGCAGCAACATGTACAGGAAGCTACAGAAGCATGAGAGCATATGTACCCAAGCATCAATCTATGTCACTAAAGAACATTACCCAGGTACAACATATCAAAGGACTGCCCATAGATTGGGAGAGAAAGTTCGACAAAGTCCATCAACTGTTCTCAAGGGTTCCACTTTACAACAAGACTTCAAAGCAGTTTGAACTTGACTTTAAAGATAAAGGAAGAGCAGAACTTAGAATCCAACGATCGGTAAAAAATTTCCAACTGACTTTGGAGGAGAATGGGAAGCAGACAATTCTTCAACTGGGTAGAGTAGGAAAATCAAAATTTGTTATGGATTACAGATATCCTTTGACGGGTTACCAGGCGTTCTGCTTAAGTTTAGCTTCCATTGATACCAAGCTCTGTTGCTCTGTGTAG 1245 0.4249 MTDACRRSSILGQSYNSLYVNPLTELRHSRSCSDSGSLASKCDKCEDFTPREVSTDNKENVTPKKKDVTRFCDKENSVPANGSYSLPKHFSKSKSLSTDRILKPNSLQFCMRMNEPEKAFGCKIWDNLCSENSSSLKIWDFSDSEAAPASSWSTLPNKSLICRPLPIDIGRCSCIVVKEAKPEGLSGGAMYSLYTYEGQGRQNRKLAVAYHKRRNGRSQFIVAQNVKGLLSNSDDSFLGTVTANLMGSKYHIWDQGYRHNSHDKQPKPPLAVVMFIPTAATCTGSYRSMRAYVPKHQSMSLKNITQVQHIKGLPIDWERKFDKVHQLFSRVPLYNKTSKQFELDFKDKGRAELRIQRSVKNFQLTLEENGKQTILQLGRVGKSKFVMDYRYPLTGYQAFCLSLASIDTKLCCSV 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5909g00001 414 Pfam Tub family 163 408 IPR000007 -
Pral5909g00001 414 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Pral5909g00001 414 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Pral5909g00001 414 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Pral5909g00001 414 PRINTS Tubby superfamily signature 237 261 IPR000007 -
Pral5909g00001 414 SUPERFAMILY Tubby C-terminal domain-like 149 412 IPR025659 -
Pral5909g00001 414 Gene3D Tubby Protein; Chain A 154 413 IPR025659 -
Pral5909g00001 414 PANTHER TUBBY-RELATED 29 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5909g00001 Pral-Chr5909 9849 12694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5909g00001 20 307 TUB Transcription Factor Family AT1G16070 52.365 8.00e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral5909g00001 Tub 1.8e-39 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5909g00001 K19600 - cave:132188154 585.104