Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5902g00007 ATGGCTTCCCTTCTTCATCCACCTGTAGCACCAGATAATAACTCTAAAGTTGTAGAACTACAAACCAGTCTAGAGTTTATTACTACATTTGAGAACACGGTGATCCAGCCAACAGATAGAAGCAAAGGTACTCAGAGAGAGGATGAGGGGGTTTTCACGACATGGGAAGACTTGTGGGTGACTGTTGGAAGCGGAAAGAGTAAAAAACCAATATTGCAGGGTCTGACTGGGTATGCCAAGCCAGGACAGCTTTTGGCCGTAATCGGTCCTTCAGGATGCGGCAAAACCACACTCCTTGATGCTTTAGCAGGAAGATTAGATTCAAACATGCAGCAAACAGGGAAGATTCTAATCAATGGACACAGACAAGCACTAGCATATGGAACATCAGCATATGTCACCCAAGATGATGCTATGTTGTCAACCTTAACAGCCGGGGAAGCTTTATATTATTCATGCCAGCTCCAACTTCCAGATTCAATGTCCATGGAAGAGAAGAAGGAGAGAGCGGATTCTACACTCAGAGAAATGGGTCTACAAGATGCCATCAACACAAGGATTGGAAGGTGGACTTCAAAAGGCCTTAGCAGTGGACAAAAGAGAAGACTTAGCATTTGCATTGAGATTATAACACGCCCGAAACTTCTATTCCTCGATGAACCAACTAGTGGTCTTGATAGTGCAGCTTCTTATTATGTTATGAGCAGAATTGCCAGTCTAAACATAAGGGATGGCATTGAAAGAACAATTGTAGCATCTATCCATCAGCCTAGCAGTGAAGTTTTTCAACTTTTCCATAATCTCTGCCTTCTGTCTTCTGGTGAAACAGTATATTTTGGCCCTGCATCTGAGGCAAATGAGTTCTTCGCTTCAAATGGTTTTCCTTGCCCAAGCCTCTACAATCCTTCTGATCATTTCTTAAAGATCATAAACAAGGATTTTGAGCAGGATCCTGAAGAAGGCTTTGGTAAAAGAGTAACCACAGAAGAAGCGATTAATATCCTTGTGGAGTCCTACAAGTCATTTGAAATTCGCAAACAAATTCTGAAGGAAGTGGAAGACATAAGCAAAAGTGATTCTGATGCATTTGGGAAAAAGAGAACCCATGCTGCATTCGTTACCCAGTGCCTTGTTCTTATAAGAAGATCTTCCCTGCATATGTACCGGGACATAAGCAATTACTGGTTACGTCTTGCTGTGTATGTTGCAATAGCTATAAGTCTGGGTACGATATTCTATAACGTGGGCTCAAGTATTGAATCTATTCAGGCTAGAGGATCGCTGCTCACATTTTTTATTTCAGTCCTCACTTTCATAACCCTTATCGGTGGATTCCCTCCATTTTTAGAGGAAATGAAGGTATTTAAACGAGAGAGGTTGGATGGACACTATGGTGTTACTGGTTTTCTGATTGGCAACACATTATCTGCTATTCCATACATGCTACTGATATCTCTGATACCTGGAGGAATAGTTTATTGCCTTTCTGGCCTGCACAAAGGACTTGAACACTTTTTGTTCCTGACTTCTGTGTTGTTTGCCACTGTTATGTCTGTTGAGAGCCTCATGATGGTTGTTGGGAGCTTCTTCTCCAATTTCATAATGGGGATGATCATTGTCGGTGGAGTTCAAGGAGTCATGATATTACTTGGTGGTTTCTATAGACTGCCAAACAATCTCCCCAAACCATTTTGGAGATACCCTTTATATTATGTTTCATTCCACAAGTATGCCGTCCAAGGGTTGTTCAAGAATGAATTTGAAGGTTTAACATTTGCCAGTGATCATGATGGAGACAGCAAAACCACTACTGGCAGGGAAATTCTGACAAACACATGGCAAGTGGAAATGGGCTACTCTAAGTGGGTTGACCTTGCAATCCTGCTTGGAATGATTGTTCTATATCGGCTTCTATTCCTGGCCATCACTAAGACCAAGGAGAATGCAAAGCCTATGGTTGCAGCTATTGGTTGTCCCCCAAGCAAAATCATGGTGACCCGCAGAGATTAG 2010 0.4214 MASLLHPPVAPDNNSKVVELQTSLEFITTFENTVIQPTDRSKGTQREDEGVFTTWEDLWVTVGSGKSKKPILQGLTGYAKPGQLLAVIGPSGCGKTTLLDALAGRLDSNMQQTGKILINGHRQALAYGTSAYVTQDDAMLSTLTAGEALYYSCQLQLPDSMSMEEKKERADSTLREMGLQDAINTRIGRWTSKGLSSGQKRRLSICIEIITRPKLLFLDEPTSGLDSAASYYVMSRIASLNIRDGIERTIVASIHQPSSEVFQLFHNLCLLSSGETVYFGPASEANEFFASNGFPCPSLYNPSDHFLKIINKDFEQDPEEGFGKRVTTEEAINILVESYKSFEIRKQILKEVEDISKSDSDAFGKKRTHAAFVTQCLVLIRRSSLHMYRDISNYWLRLAVYVAIAISLGTIFYNVGSSIESIQARGSLLTFFISVLTFITLIGGFPPFLEEMKVFKRERLDGHYGVTGFLIGNTLSAIPYMLLISLIPGGIVYCLSGLHKGLEHFLFLTSVLFATVMSVESLMMVVGSFFSNFIMGMIIVGGVQGVMILLGGFYRLPNNLPKPFWRYPLYYVSFHKYAVQGLFKNEFEGLTFASDHDGDSKTTTGREILTNTWQVEMGYSKWVDLAILLGMIVLYRLLFLAITKTKENAKPMVAAIGCPPSKIMVTRRD 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5902g00007 669 SMART AAA_5 81 270 IPR003593 GO:0016887
Pral5902g00007 669 Pfam ABC-2 type transporter 374 587 IPR013525 GO:0016020|GO:0140359
Pral5902g00007 669 Pfam ABC-2 type transporter 255 362 IPR043926 GO:0140359
Pral5902g00007 669 ProSitePatterns ABC transporters family signature. 195 209 IPR017871 GO:0005524|GO:0016887
Pral5902g00007 669 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 44 655 - -
Pral5902g00007 669 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 53 298 IPR003439 GO:0005524
Pral5902g00007 669 FunFam ABC transporter G family member 11 51 338 - -
Pral5902g00007 669 Pfam ABC transporter 73 223 IPR003439 GO:0005524
Pral5902g00007 669 Gene3D - 53 293 IPR027417 -
Pral5902g00007 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 289 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5902g00007 Pral-Chr5902 71175 74464 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5902g00007 82 233 Calmodulin-binding Proteins AT2G36910 28.659 2.54e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5902g00007 K05681 - gmx:100790102 936.406