Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5902g00006 ATGGTAGACTATTCGTGTACTCCTGAAGAAGTGCAGCAGCATTTCCAATCATGTGGAACAGTAAACAGAGTCACCATTCGTACTGACAAGTTTGGACAACCCAAGGGTTATGCTTATGTGGAGTTCCTTGAGGCAGAGGCTGTTCAGGAGGCGCTTTTGCTGAATGAATCTGAGCTACATGGGCGTCAGTTGAAGGTGACAGCCAAGAGGACGAACATACCTGGGATGAAGCAGTATCGTCCCCGCCGGTCCAATCCTTATATGGGGTTTCGAGGCAGAACCCCATATGCACCTCCTTTTGCCTATTCTCCATCTCCATATGGATATGGGAAAGTTCCAAGGTTTAGAATGCCAATGCGTTACAGCCCATACTATTGA 378 0.4762 MVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEAEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPYMGFRGRTPYAPPFAYSPSPYGYGKVPRFRMPMRYSPYY 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5902g00006 125 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 71 IPR000504 GO:0003723
Pral5902g00006 125 SUPERFAMILY RNA-binding domain, RBD 3 93 IPR035979 GO:0003676
Pral5902g00006 125 Gene3D - 1 75 IPR012677 -
Pral5902g00006 125 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 2 92 - -
Pral5902g00006 125 SMART rrm1_1 2 67 IPR000504 GO:0003723
Pral5902g00006 125 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 65 IPR000504 GO:0003723
Pral5902g00006 125 CDD RRM_II_PABPs 2 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5902g00006 Pral-Chr5902 60285 62932 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5902g00006 2 66 Eukaryotic Initiation Factors Gene Family AT2G23350 30.303 1.75e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5902g00006 K14396 - qsa:O6P43_031629 217.238