Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral589g00003 ATGGGCCATCGTTGCTGCAGCAAACAGAAGATCAAAAGAGGTCTGTGGTCTCCTGAAGAAGATGACAAGCTCGTCAAATTCATTACCACTCATGGCCATAAAAGCTGGAGTTCTGTTCCTAAACTTGCAGGGTTGCAGAGATGTGGGAAAAGTTGCAGACTGAGATGGATAAACTATCTGAGACCTGATCTCAAGAGAGGTTCCTTCACTGCCGATGAAGAACAAACCATTCTCGACGTTCATCGAATTCTCGGAAACAGATGGGCTCAGATAGCTAAGCATCTACCGGGAAGAACAGACAACGAGGTGAAGAATTTCTGGAACTCATGCATTAAGAAGAAACTCATTTCTCAGGGCTTTGACCCTCAGACTCACAATCTCCTCTCTTCTCACAGACGACCCTCTCTTTCTGTTTCTTCCTCTTCTGCCACTAACAATGATCATAACAATGATTCCACTTTCAAACTGGTTCATGAACCTGAAAACATGAATCTTCAACAACCTTGTACCTCCACCGTCTTCTCCATCCAATACCAACGACCCAATTCGACCAGCACTAATAATCATAATGTCATAATGTCCTAA 585 0.4359 MGHRCCSKQKIKRGLWSPEEDDKLVKFITTHGHKSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTADEEQTILDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGFDPQTHNLLSSHRRPSLSVSSSSATNNDHNNDSTFKLVHEPENMNLQQPCTSTVFSIQYQRPNSTSTNNHNVIMS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral589g00003 194 SMART sant 65 113 IPR001005 -
Pral589g00003 194 SMART sant 12 62 IPR001005 -
Pral589g00003 194 CDD SANT 68 108 IPR001005 -
Pral589g00003 194 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pral589g00003 194 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Pral589g00003 194 MobiDBLite consensus disorder prediction 126 153 - -
Pral589g00003 194 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pral589g00003 194 PANTHER MYB DOMAIN PROTEIN 55 1 177 - -
Pral589g00003 194 FunFam Transcription factor MYB86 67 145 - -
Pral589g00003 194 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Pral589g00003 194 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Pral589g00003 194 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pral589g00003 194 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Pral589g00003 194 CDD SANT 16 60 IPR001005 -
Pral589g00003 194 Gene3D - 67 153 - -
Pral589g00003 194 FunFam Myb transcription factor 10 66 - -
Pral589g00003 194 Gene3D - 10 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral589g00003 Pral-Chr589 10960 12530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral589g00003 1 133 MYB Transcription Factor Family AT3G12720 84.211 4.98e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral589g00003 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral589g00003 K09422 - gmx:100791209 261.536