Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral589g00001 ATGGCACCGATGAGTCTCCCACCCGGGTTTAGGTTCCACCCAACGGATGAAGAACTCGTTGCTTACTACTTGGAAAGAAAAATCACAGGCCGTTCTATAGAGCTTGAAATTATCCCTGAAGTTGATCTTTACAAATGCGAACCATGGGATTTGCCAGATAAGTCGTTCTTGCCAAGTAAGGATATGGAATGGTACTTCTACAGTCCGAGGGATAGAAAGTATCCAAATGGGTCAAGAACAAACCGAGCAACAAGAGCTGGATACTGGAAAGCCACAGGCAAAGATAGGGCAGTTCATTCTCAGAAACGCCAAGTAGGGATGAAGAAGACATTGGTTTATTACAGAGGAAGAGCACCACATGGTATCAGAACCAGCTGGGTCATGCACGAATATCGTCTCACTGATTCACTTCCTCCTTCTACTTCTTCCTTCTCCTTGAAGGATTCTTATTCATTGTGTCGTGTCTTCAAGAAGACGATCGAAATCCCAAAACCAAAAGAAGATCGGGAGGAAGAGGAAACAGAAATTACTGCTAATAAGAACAAGGGATCAAAGTCTGACATGTGGGTCGCAGATGAACAAGGATTAAGGGAGGATTCAAGTGGCTTCGAGGTTTCTAGAGAAATGGAAATTCCAGATGAGAAAACTATGGTCAATAAAAATAATAATCACGATGGTGGCAATTCCAACAGTAAATTTCCTTGTGATAATGCTTCGTCTTCGGATCTCACTCAAGGGACCCCCACTGATCAAACTGGGTTAGCAGATAATGATTTTCAAGCCCAAATTGCTTCTGATGAAGCAAATAGTGCAGCAAATCGGTATTCCCTTGGAATTGATTATTCATCAAATCTATTTCAGGAAATGGAGCTACAAATGTATGCTGGCATGCACTATCAACTTTCATATCCGCCACTGGAGCTTGAAGATTTCCCTCAGACAAGTTTCGTAGAGACCACGACGGAGACGAAGCCATTAATGAAGCCAGAACAAATGATGATGAATGACTGCAATATGGTATATGATCACAAGTACAAGAGCTGTGGTACAATGAGTGGGACTCTAGAAGAGATCATCTCCTTGTGTTCTTCTCATCAAGACAATAAGTCTTTGCCTCTTTCTATGTTAGATTGA 1134 0.4206 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELEIIPEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVHSQKRQVGMKKTLVYYRGRAPHGIRTSWVMHEYRLTDSLPPSTSSFSLKDSYSLCRVFKKTIEIPKPKEDREEEETEITANKNKGSKSDMWVADEQGLREDSSGFEVSREMEIPDEKTMVNKNNNHDGGNSNSKFPCDNASSSDLTQGTPTDQTGLADNDFQAQIASDEANSAANRYSLGIDYSSNLFQEMELQMYAGMHYQLSYPPLELEDFPQTSFVETTTETKPLMKPEQMMMNDCNMVYDHKYKSCGTMSGTLEEIISLCSSHQDNKSLPLSMLD 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral589g00001 377 ProSiteProfiles NAC domain profile. 6 158 IPR003441 GO:0003677|GO:0006355
Pral589g00001 377 MobiDBLite consensus disorder prediction 217 251 - -
Pral589g00001 377 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Pral589g00001 377 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Pral589g00001 377 MobiDBLite consensus disorder prediction 164 185 - -
Pral589g00001 377 MobiDBLite consensus disorder prediction 164 180 - -
Pral589g00001 377 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Pral589g00001 377 MobiDBLite consensus disorder prediction 221 251 - -
Pral589g00001 377 FunFam Nac domain-containing protein 86 15 161 - -
Pral589g00001 377 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral589g00001 Pral-Chr589 2880 6988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral589g00001 1 360 NAC Transcription Factor Family AT1G54330 50.413 9.65e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral589g00001 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral589g00001 - - gmx:100790679 483.026