Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5898g00001 ATGGCCTCCTTAGCTTGGAGTGATACAAATATCACTACCGACAAATCTGCACTTCTTGCTTTTAAATCATTCATCACTTTAGATCCACACAATTTCTTAGCTAATTGGTCTATCTCTTCTTCTCCATGCAGCTGGATTGGTGTCACATGCAATACTCGTCATGGAAGAGTCCACTCCTTGAATCTTGGTGGCATAGATCTTAAGGGTACCATATCTCCACAACTAGGAAATCTCTCATTCCTTGTTGAATTTGACCTTAGTGACAACGATTTTCATGGTCAAATACCAAACGAGCTAGTTAAATTGCATAGATTGGAACTACTCAATTTGAGCTACAATGACTTTCATGGACAAGTTCCAGTATGGATAGAAGATTTATCTTCACTTGAGCAATTACATCTTCAAAATAACAGTCTTAGTGGATTTATTCCACCATCTATATTTAATCTGACACTGCTAAACACCTTGGATTGTAATGATAATTTACTTGAAGGGACCATTCCACTCGAAGTGGGAAGACTTGAGCGATTGAAGATTTTACGTCTTGCGGGTAACAAGCTTTCAGGAAACATTCCCCAAACAATTTCCAACTTATCTTCCCTTGAGTTATTGAGTTTGTCTTATAACAGTTTGTCAGGAAGCATCCCAAGTGAGATTGAGAATCTTTCACAATTGAAGAAATTGTATCTTGGAAATAATCAACTTGTTGGTTCAATACCATCTTCATTATTCAACAATTCAGTGCTGCAAGACTTTCAACTTTCAGTAAATAACTTGTCTAGGAGTCTCCCAACAAATGTGTGTGCTGGGCTCCCAAAGCTACAAATATTTTATGTAGATGGAAATGATTTGTCTGGCAAAATACCCTCCACTTGGCATCAATGCACATGGCTATATCTCTCCAACAGCAACTTGCAAGGAATTATTCCAAGTGAGATTGGAAATTTGACAAACCTCGAAATGCTTTCTCTTAGCAACAACAATTTGCAAGGTGAAATTCCTTCATTTCTTTGGAACATGCCTTCTTTGAGAATGATTTTTCTTGGCGCCAATCATTTAAAGGGTAATTTGCCTGAAGAAATGTGTCATCATCTCCCTTTAGTTGAAGTCTTTGACGTTGATGATAATAGATTAGAGGGAAGCATTCCTCAATCAATAAGCAACTGCACATCTTTAAAAGAATTATATTTGGATATTAACTCATTTACAGGTTTTATACCCAAGGACATAGGCGGTCTTGTTAAACTTGAAATCATAGATTTGGGATCAAATTATTTGAGTGGACCTATTCCTTTCAGTATATTCACCATTTCAACATTGAAATACTTAAGCCTTGGCAGTAATTCCCTCTCTAGCCTTCTCCCATCATATTTAGGGATTGGCCTTCCCAACTTGGAGAATTTACTACTGAATGATAATGAGATAATTGGACAAATTCCAAACAGCATATCAAATGCTTCTAAGCTCATTGAGTTAAATTTGTCATTGAATAAATTAAATGGATCTATACCCAATGTCATTGGAAATTTAAAAAACTTGTTCGACTTAGCTTTGGATGGGAATGATTTGACTGGGTTGATTCCAGACAGAGTTAGCAACTTACATAAACTTCAACGTTTAAGTCTCAGCAACAACAGATTGCAGGGTTCCATCATAAATGAACTTTGCCAACTCAAAAGTCTAAGTGAGTTGTATCTTGCCAACAACATGTTTTCGGGAGCATTACCAGGATGTCTCAGGAATACTTCTTTGCGGAAGTTGAATTTTAGCTCCAACAAATTGATGTCTCATATACCTTTTTCTTTCTGGAGTCTCAAAGATATCTTAGTTTTAGACATATCGTCCAATGCATTGAGTGGATCAATATCGCCAGAGTTATCAAACTTTAGAGCAATTATACTGTTGAACTTGTCAAGAAACCAGATTTCAGGAAGCATCCCTACAACTATGGGTGGCTTGCAAACCTTGATAACTCTATCTTTGGCTAACAACAAATTACAAGGGTCTATTCCTCAATCATTTAGTAGCATGATAAGCATAGAGTCCATGGACCTTTCCCATAATTATTTATCTGGTGTGATTCCAAAGTCCTTAGAGTCATTACTCAATCTTAAATACATTAATCTTTCTTACAATTTGTTGGATGGAGAAATTCCAAATGGTGGTCCTTTTCAAAATTTTACTGCTCAATCTTTTATGATGAATAAAAATCTTTGTGGGAAATCCCAACTACAAGTCCAACCATGTAGGAGAGGAAACAAACACAAATCAAACAAAGTGATGCTGGTGATAAAATGCTCAGTGCCTATCATGGTTGTCATTTTGGTCGTTACAAGCATTATCTTTCTAAAGCATAACAGAGACGATGCTGACTATGCAACCAAAAGGGATTTAACCAATTTGGATGCACCAACTAGGATATCCTATTATGAGCTTTTACAGGGAACAAATAGATTTGATGAAAGTAATCTTCTTGGCTCTGGAAGTTTTGGATCAGTATATAAAGCAATTCTTCCAAATGAAAAGATAGTTGCTGTCAAAGTATTTAACATAGACATGGAAGAAGCATTGAGAAGTTTTGATATTGAATGTGCAGCTATGTGCAATTTACGCCACCGTAATCTCATTAAGATCATTAGTTGTTGCTCGAATGATGATTTCAAGTCTCTAATAATGGAATTCATGTCAACTGGAAGCCTTGATAGATGGTTGTACTCTCATAACTACTGTTTAGATATCCTACAAAGGTTGAATATAATGGTTGATGTGGCAACTGCATTAGAGTATCTTCATCATGGTATTTCTACTCCAATTGTTCATTGTGACATAAAACCAAGTAATGTTTTGTTGGATGAAGATATGGTGGCTCATCTTAGTGATTTTGGTATGGCTAAACTATTAGGTGAAGGACAATTGGAAACTCGTACAAAAACATTAGCTACAGTTGGCTATATGGCACCAGAGTATGGATCAAAAGGAGTGGTTTCTTTCAAAGGAGATGTGTATAGCTATGGTATCATGCTAATGGAGATATTTACAAGGAAGAAGCCAACCGATGAAATGTTTGAGGAAGATCTTGGTTTGAAAGATTGGGTTAGCAAATCAACACCACATTCAATCATCAATATTCTAGATGTCAATTTGCTACCAAAAGGGAATTCAAATATCAACAATATATTAGCACATATATCATCAATTTTTGAGTTGGCATTAAGTTGTTGCACTGAATTACCTGAAGCACGAATTATGATGACTGATGTTGTCGTCTCATTGAAAAAGATAAGGTCATATTTATGTAAGATGTTAGAGATGCAACACTAG 3321 0.3595 MASLAWSDTNITTDKSALLAFKSFITLDPHNFLANWSISSSPCSWIGVTCNTRHGRVHSLNLGGIDLKGTISPQLGNLSFLVEFDLSDNDFHGQIPNELVKLHRLELLNLSYNDFHGQVPVWIEDLSSLEQLHLQNNSLSGFIPPSIFNLTLLNTLDCNDNLLEGTIPLEVGRLERLKILRLAGNKLSGNIPQTISNLSSLELLSLSYNSLSGSIPSEIENLSQLKKLYLGNNQLVGSIPSSLFNNSVLQDFQLSVNNLSRSLPTNVCAGLPKLQIFYVDGNDLSGKIPSTWHQCTWLYLSNSNLQGIIPSEIGNLTNLEMLSLSNNNLQGEIPSFLWNMPSLRMIFLGANHLKGNLPEEMCHHLPLVEVFDVDDNRLEGSIPQSISNCTSLKELYLDINSFTGFIPKDIGGLVKLEIIDLGSNYLSGPIPFSIFTISTLKYLSLGSNSLSSLLPSYLGIGLPNLENLLLNDNEIIGQIPNSISNASKLIELNLSLNKLNGSIPNVIGNLKNLFDLALDGNDLTGLIPDRVSNLHKLQRLSLSNNRLQGSIINELCQLKSLSELYLANNMFSGALPGCLRNTSLRKLNFSSNKLMSHIPFSFWSLKDILVLDISSNALSGSISPELSNFRAIILLNLSRNQISGSIPTTMGGLQTLITLSLANNKLQGSIPQSFSSMISIESMDLSHNYLSGVIPKSLESLLNLKYINLSYNLLDGEIPNGGPFQNFTAQSFMMNKNLCGKSQLQVQPCRRGNKHKSNKVMLVIKCSVPIMVVILVVTSIIFLKHNRDDADYATKRDLTNLDAPTRISYYELLQGTNRFDESNLLGSGSFGSVYKAILPNEKIVAVKVFNIDMEEALRSFDIECAAMCNLRHRNLIKIISCCSNDDFKSLIMEFMSTGSLDRWLYSHNYCLDILQRLNIMVDVATALEYLHHGISTPIVHCDIKPSNVLLDEDMVAHLSDFGMAKLLGEGQLETRTKTLATVGYMAPEYGSKGVVSFKGDVYSYGIMLMEIFTRKKPTDEMFEEDLGLKDWVSKSTPHSIINILDVNLLPKGNSNINNILAHISSIFELALSCCTELPEARIMMTDVVVSLKKIRSYLCKMLEMQH 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5898g00001 1106 Pfam Leucine rich repeat N-terminal domain 13 51 IPR013210 -
Pral5898g00001 1106 ProSitePatterns Serine/Threonine protein kinases active-site signature. 938 950 IPR008271 GO:0004672|GO:0006468
Pral5898g00001 1106 Gene3D Phosphorylase Kinase; domain 1 783 894 - -
Pral5898g00001 1106 Gene3D Transferase(Phosphotransferase) domain 1 895 1103 - -
Pral5898g00001 1106 ProSiteProfiles Protein kinase domain profile. 819 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5898g00001 1106 FunFam Serine-threonine protein kinase plant-type 799 894 - -
Pral5898g00001 1106 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 895 1104 - -
Pral5898g00001 1106 Gene3D Ribonuclease Inhibitor 11 167 IPR032675 -
Pral5898g00001 1106 Gene3D Ribonuclease Inhibitor 168 269 IPR032675 -
Pral5898g00001 1106 SUPERFAMILY Protein kinase-like (PK-like) 800 1091 IPR011009 -
Pral5898g00001 1106 Pfam Leucine rich repeat 516 570 IPR001611 GO:0005515
Pral5898g00001 1106 Pfam Leucine rich repeat 656 714 IPR001611 GO:0005515
Pral5898g00001 1106 Pfam Leucine rich repeat 369 426 IPR001611 GO:0005515
Pral5898g00001 1106 Pfam Leucine rich repeat 176 235 IPR001611 GO:0005515
Pral5898g00001 1106 Pfam Leucine rich repeat 296 353 IPR001611 GO:0005515
Pral5898g00001 1106 SUPERFAMILY L domain-like 12 295 - -
Pral5898g00001 1106 SUPERFAMILY L domain-like 516 740 - -
Pral5898g00001 1106 Pfam Protein kinase domain 820 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5898g00001 1106 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 463 753 - -
Pral5898g00001 1106 SMART serkin_6 819 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5898g00001 1106 SMART LRR_typ_2 534 557 IPR003591 -
Pral5898g00001 1106 SMART LRR_typ_2 340 364 IPR003591 -
Pral5898g00001 1106 SMART LRR_typ_2 316 339 IPR003591 -
Pral5898g00001 1106 SMART LRR_typ_2 365 389 IPR003591 -
Pral5898g00001 1106 SMART LRR_typ_2 462 486 IPR003591 -
Pral5898g00001 1106 SMART LRR_typ_2 653 676 IPR003591 -
Pral5898g00001 1106 SMART LRR_typ_2 126 150 IPR003591 -
Pral5898g00001 1106 SMART LRR_typ_2 558 581 IPR003591 -
Pral5898g00001 1106 SMART LRR_typ_2 677 700 IPR003591 -
Pral5898g00001 1106 SMART LRR_typ_2 222 246 IPR003591 -
Pral5898g00001 1106 SMART LRR_typ_2 701 725 IPR003591 -
Pral5898g00001 1106 SMART LRR_typ_2 174 197 IPR003591 -
Pral5898g00001 1106 SMART LRR_typ_2 198 221 IPR003591 -
Pral5898g00001 1106 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 11 146 - -
Pral5898g00001 1106 Gene3D Ribonuclease Inhibitor 270 459 IPR032675 -
Pral5898g00001 1106 Gene3D Ribonuclease Inhibitor 460 758 IPR032675 -
Pral5898g00001 1106 SUPERFAMILY RNI-like 271 578 - -
Pral5898g00001 1106 FunFam Leucine-rich repeat receptor protein kinase EMS1 147 240 - -
Pral5898g00001 1106 ProSitePatterns Protein kinases ATP-binding region signature. 825 847 IPR017441 GO:0005524
Pral5898g00001 1106 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 266 462 - -
Pral5898g00001 1106 SMART LRR_sd22_2 316 331 - -
Pral5898g00001 1106 SMART LRR_sd22_2 462 488 - -
Pral5898g00001 1106 SMART LRR_sd22_2 413 445 - -
Pral5898g00001 1106 SMART LRR_sd22_2 126 152 - -
Pral5898g00001 1106 SMART LRR_sd22_2 198 224 - -
Pral5898g00001 1106 SMART LRR_sd22_2 534 557 - -
Pral5898g00001 1106 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 518 1092 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5898g00001 Pral-Chr5898 1485 24925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5898g00001 4 1095 Receptor kinase-like Gene Family AT5G46330 35.484 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pral5898g00001 Pkinase 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5898g00001 - K13420 pcin:129285519 1154.43