Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5896g00005 ATGGCGGAAGAGCAGCGATGCCAAACATCCGAAGGCCACCGGCTCTGCGCCAACAACTGCGGCTTCTTCGGAAGTCCGGCCACCATGAACCTCTGCTCCAAATGCTACAGAGATTTCTGTCTCAAGGAGCAACAGCAGGCCTCTACGAAATCAACCATCGAAACCGCTCTCTCCTCCTCATCTGTCCCTGCGCCTTCGCCGGCCGCGGAGGCCCTCCCTCCTCCGCAGGCGTTGAAAGCGCCGGATGTTGTGGCGGACGCGTCGATCCCGGCGCCGGCGGCCGCCGTACCAGATGGGCCGGTGACGCAACCAAACCGATGCGCCACGTGTCGTAAAAGGGTCGGGTTTACCGGGTTCAAGTGCAAGTGCGGGATTACGTTTTGTGGTGTCCACAGGTATCCGGAGAAACACGGGTGTAGCTTCGATTTCAAGGCGGTGGGCCGAGAAGAAATAAGTCGAGCGAATCCGGTGGTCATAGCGGAGAAGCTCCAGAAGATTTGA 501 0.5928 MAEEQRCQTSEGHRLCANNCGFFGSPATMNLCSKCYRDFCLKEQQQASTKSTIETALSSSSVPAPSPAAEALPPPQALKAPDVVADASIPAPAAAVPDGPVTQPNRCATCRKRVGFTGFKCKCGITFCGVHRYPEKHGCSFDFKAVGREEISRANPVVIAEKLQKI 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5896g00005 166 ProSiteProfiles Zinc finger AN1-type profile. 101 147 IPR000058 GO:0008270
Pral5896g00005 166 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Pral5896g00005 166 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Pral5896g00005 166 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Pral5896g00005 166 SMART AN1_Zf_4 107 144 IPR000058 GO:0008270
Pral5896g00005 166 MobiDBLite consensus disorder prediction 51 77 - -
Pral5896g00005 166 Gene3D - 85 161 IPR035896 -
Pral5896g00005 166 MobiDBLite consensus disorder prediction 51 65 - -
Pral5896g00005 166 Pfam AN1-like Zinc finger 107 143 IPR000058 GO:0008270
Pral5896g00005 166 SUPERFAMILY AN1-like Zinc finger 100 161 IPR035896 -
Pral5896g00005 166 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 166 - -
Pral5896g00005 166 Gene3D - 1 63 - -
Pral5896g00005 166 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Pral5896g00005 166 FunFam Zinc finger AN1-type containing 6 84 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5896g00005 Pral-Chr5896 34478 35990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5896g00005 1 166 C2H2 Transcription Factor Family AT3G52800 57.647 8.52e-57 174