Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5894g00008 ATGGAGACTCTGAAAGCTGCAATCCCGGAGAGCCTGAAACGAATGATTGGAGAGAGCACTGCAGATGATCTTCCGACCACATGTTCTTCTCTTCATCATTTTTTTCTTCATTTTGAGCCCTTTCACCAAATGGTGAGTGACTTAGCAGACCCAAAAAATGCTTTATGTGGCAAGAGTGAGGCCGCTGCTTCGGAGTCCAAGCAGCTTGGCAACCATTACTTCTTGAGGGGAGATTATATAAAGGCTTTGAATTGCTATACGAAGGCATTGCGTATGGCTCCTTTGGAGGCTTTTGACCTGGAGAAGAATTTGGTTGCTGTATTATATATTAATCGAGCTACTGCGTTGCATAAATTGAATCTTTTAAGTGAGTGTTTGCGAGACTGCGCTCGAGCTCTTCAGATATGTCCAAGCTATGCAAAGGCATGGTACAGGAGGGGTAAGGCGAATGTTTCATCGGGAAATTATGAAGATGCAATCTGTGATCTAAATGTGGCTAAGAGCATGGAATCATCATTGAGTGGGAAGAAACAAATAGAAAGTGAACTTAACAGTATATTACACGAATGCGAGGGGACAAGTTCAGTAGTTCAGAATGAGAGGAATGGCTTGGATACAGTAGATGAGATGCCTCAAATAAAGCTACAGTTAGTCTCCACGCCTGATAAAGGACGGGGTATGATTTCACCATGTGACTTATCTCCAGCTTCGTTAGTTCATCGTGAAGAACCTTATGCCATGATAATATTAAAGCAATGCCGAGAAACACATTGCCATTACTGCTTGAATGACCTGCCTACTGATGCCGTTCCTTGTAGATCTTGTTCAATACCACTATATTGCTCCCAGCAATGCCAGATACAAGCTGGTGGACAGGTGTTCAAGAGTAATCCTGAAGACCATGGCATTCTTAAAGGTCTACCCAGTGATCTTGGGACATATGCTGCTAGAATTATATTAGAAAATGATTCTAAACATGAGATTGAGGATATTCCTGAGCATAAACATGAATGCCAAGGCGTACATTGGTCTACAGTTTTACCATCTGAGATTGTTTTAGCAGGCCGAGTACTAGCAAAGTTTTTCCAGAAGAGTGATTACGAAGATATTGCATACTTTGTGAAGAGCCTGGAACTTTTTCATTGCTATGTACAACTTCCATCTGATAGCAAATTGGATTCACATATATATGCCATTGTATTGCTATACTGTCTGCTACACTCTTGTGGTGCTAGGTTTTCCATGGATGGGGTCACTATGTCGCAGGTTGTCTTAATTTTTTCTCAAATCAAAGTGAATTGCATGACTGTTGTTCGTATAAGATCTATAGATGCTCATGGGCTACAAGATCAGTTCCGAGAATCTCTAGCCAGTGAATGCTTAACGAGTAATGTGGAACAGGTCAGAGTGGGTAAAGCTATTTACAAAGGTGGCAGCTTGTTCAACCATTCTTGCCAACCAAATGTTCATGCTTATTTCCTTTCACGTGCTTTGTGTATACGAACAACAGAAGTTGTAGCAGCTGGGTGTCAGCTGGAATTATCCTATGGTCCGCAGGTTGGGTTATGGGATAGTAAAGATCGCCAAGCCTTTCTGAAAGATGAGTACTCATTTCAATGTCGTTGCAGGGCTTGCTCAGAATTCAATCTGTCTGACATTGTCTTTGGTGCTTTTCACTGTGTCAGTCCAAGTTGTTCTGGTGCGGTCTTGGACAGCAGAGTAGTTAACTGGGAAAGGCAGAAAATTAAGTCCTTCCCTGGTGCTGTCAAAGTTGACAAGAATGATGACATTTATAAAATCTGTCTCCGTTTATTCAACCAAAATGATGGCTACGCTCATATTCAGCCTGGGTACTGTTTGAGATGTGGTTCTTACCGTGATTTTGAGTCTTTGTACACTGCAGTTGATAAAGCTTGGATATGCATCAAAAGATTGCAGGATGCAGTAAGTTCAAAGGAAATTTCGAATCCTACTATCTCAGATGCATTAAAATCTCTTCATCTTCTGAAGTCATATTTGCATTCCTACAACAAACATATTGCAGAGGCAGAGGACAGCCTTGCTCAGGCCTTTTGTATGGTGGGAGAATTAGAATTAGCTATGGACCATTGTAAAGCATCTTTGCTGATTCTGCAAAAGCTATATGATCCGGATGATATTGTCATTGCCTTCGAGCTTGTGAAGCTTTGTTCCATTCAAATTTCCATGGGTGATAAAACCGCGCTGGAAAGCATAAATCGAATATGTGGTATCTTCTCACGTTATTATGGACTTCATGCACAGTCGTTATTCCCATATCTTCAGTACCTTAGAAAGAGACTGGGAATTTGTGAGTGA 2337 0.4134 METLKAAIPESLKRMIGESTADDLPTTCSSLHHFFLHFEPFHQMVSDLADPKNALCGKSEAAASESKQLGNHYFLRGDYIKALNCYTKALRMAPLEAFDLEKNLVAVLYINRATALHKLNLLSECLRDCARALQICPSYAKAWYRRGKANVSSGNYEDAICDLNVAKSMESSLSGKKQIESELNSILHECEGTSSVVQNERNGLDTVDEMPQIKLQLVSTPDKGRGMISPCDLSPASLVHREEPYAMIILKQCRETHCHYCLNDLPTDAVPCRSCSIPLYCSQQCQIQAGGQVFKSNPEDHGILKGLPSDLGTYAARIILENDSKHEIEDIPEHKHECQGVHWSTVLPSEIVLAGRVLAKFFQKSDYEDIAYFVKSLELFHCYVQLPSDSKLDSHIYAIVLLYCLLHSCGARFSMDGVTMSQVVLIFSQIKVNCMTVVRIRSIDAHGLQDQFRESLASECLTSNVEQVRVGKAIYKGGSLFNHSCQPNVHAYFLSRALCIRTTEVVAAGCQLELSYGPQVGLWDSKDRQAFLKDEYSFQCRCRACSEFNLSDIVFGAFHCVSPSCSGAVLDSRVVNWERQKIKSFPGAVKVDKNDDIYKICLRLFNQNDGYAHIQPGYCLRCGSYRDFESLYTAVDKAWICIKRLQDAVSSKEISNPTISDALKSLHLLKSYLHSYNKHIAEAEDSLAQAFCMVGELELAMDHCKASLLILQKLYDPDDIVIAFELVKLCSIQISMGDKTALESINRICGIFSRYYGLHAQSLFPYLQYLRKRLGICE 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5894g00008 778 ProSiteProfiles SET domain profile. 213 517 IPR001214 GO:0005515
Pral5894g00008 778 SUPERFAMILY SET domain 210 547 IPR046341 -
Pral5894g00008 778 Pfam SET domain 466 517 IPR001214 GO:0005515
Pral5894g00008 778 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Pral5894g00008 778 Gene3D Tetratricopeptide repeat domain 38 198 IPR011990 GO:0005515
Pral5894g00008 778 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 772 - -
Pral5894g00008 778 SMART tpr_5 106 139 IPR019734 GO:0005515
Pral5894g00008 778 SMART tpr_5 63 96 IPR019734 GO:0005515
Pral5894g00008 778 SMART tpr_5 681 714 IPR019734 GO:0005515
Pral5894g00008 778 SMART tpr_5 140 173 IPR019734 GO:0005515
Pral5894g00008 778 SUPERFAMILY TPR-like 66 711 IPR011990 GO:0005515
Pral5894g00008 778 Gene3D Tetratricopeptide repeat domain 522 772 IPR011990 GO:0005515
Pral5894g00008 778 Gene3D SET domain 421 516 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5894g00008 Pral-Chr5894 44139 51495 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral5894g00008 SET 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5894g00008 K24634 - pcin:129294093 1391.71