Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5893g00004 ATGGAAACATCGGGTGCTAATTCAGAACAATACGCCATGTCTTCCTCCTCCTCATCTTCCACTGTTGGTGTAAATAATAGTAACAGTAATAGCACTGAAACCTGGTACGGGATGAGGTTAGCCCCTGTCAGCCCCTTCCGTTCTCCAGTTTCCTTGCTATTAAATTACGCGGGCATTCTCCACTCAAGTTCGTCAGCTCGCGATTCAGAGGCCACGACAGTCAACAGCGGAGTTACCCCGTTGGAAATACGCTCTCAGCTTCCTGAGTCTGGCACCGCGTGCAGTAGCAGTGCTGGTGAAGTTTCGATACGGATAATTGGGGCTGCAGAACAAGAACAGAGTGTTGCGTTAGGTTCTTTTTCTACTACCTCTCTAAATCAGCTTGGACAAGTCGATCACGATGATTTGACGAGAAATAGAGGAGGAATGCCCGCACTGGATGAGGGTGCGGAGGATCGCAGCGGAAGAGCCCCCTTAGTGTCTTCAACGACACCGGCCACTAGTGGACAGGTGGATGAAAATGTCGGAAACGCCGCGGAAAGCAACCATGGGGATTCATCCTCTTACCAGAGGTATGATATTCAGCAGGCTGCTAAGTGGATTGAGCAGATTCTTCCTTTCTCACTGTTGCTATTGGTTGTTTTCATTCGTCAGCACTTGCAAGGCTTTTTTGTCACGATTTGGATTTCAGCTGTGATGTTCAAATCAAATGAAATTGTTAAGAGGCAGACAGCGCTGAAGGGAGACAGGAGAGTCTCAATTCTTGTTGGCATCTCTGTCGCCTTCATGCTTCATGTGATGTGCATTTACTGGTGGTATCAAAGTGATGATCTTTTATACCCGCTGATCATGGTTCCTCCAAAATCAGCACCACCTTTCTGGCATGCTATATTCATCATCTTGGTTAATGATACACTAGTGCGGCAAGTAGCAATGGCTTTCAAGTGTTTGCTGCTTATATATTACAAAAATGGAAGAGGTCACAACTTCCGCCGCCAGGGCCAAATGTTAACTCTGGTCGAATATTCATTGCTGTTGTATCGTGCCTTGTTGCCTACATCAGTTTGGTACCGTTTTTTCTTAAACAAGGATTATGGGAGTCTTTTTTCATCACTGACAACAGGATTGTATTTAACTTTCAAGCTAACATCTGCTATTGAGAAGGTTCAATGCTTCTTCTCTGCCTTAAAAGCATTATCAAGAAAGGAAGTTCATTATGGAATATATGCCACAATGGAACAGGTAAATGCTGCTGGCGACCTATGTGCTATATGCCAAGAGAAGATGCATGCTCCAGTTTTGTTGCGTTGCAAACACATCTTCTGTGAGGAATGCGTATCAGAATGGTTTGAGAGAGAACGGACTTGCCCGCTATGCAGAGCATTGGTAAAACCCGCTGAACTACGGACCTTTGGAGACGGATCGACAAGTCTAATTTTCCAGCTGTTTTAG 1452 0.4532 METSGANSEQYAMSSSSSSSTVGVNNSNSNSTETWYGMRLAPVSPFRSPVSLLLNYAGILHSSSSARDSEATTVNSGVTPLEIRSQLPESGTACSSSAGEVSIRIIGAAEQEQSVALGSFSTTSLNQLGQVDHDDLTRNRGGMPALDEGAEDRSGRAPLVSSTTPATSGQVDENVGNAAESNHGDSSSYQRYDIQQAAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKRQTALKGDRRVSILVGISVAFMLHVMCIYWWYQSDDLLYPLIMVPPKSAPPFWHAIFIILVNDTLVRQVAMAFKCLLLIYYKNGRGHNFRRQGQMLTLVEYSLLLYRALLPTSVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSAIEKVQCFFSALKALSRKEVHYGIYATMEQVNAAGDLCAICQEKMHAPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPAELRTFGDGSTSLIFQLF 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5893g00004 483 ProSitePatterns Zinc finger RING-type signature. 437 446 IPR017907 -
Pral5893g00004 483 ProSiteProfiles Zinc finger RING-type profile. 422 460 IPR001841 -
Pral5893g00004 483 MobiDBLite consensus disorder prediction 157 187 - -
Pral5893g00004 483 MobiDBLite consensus disorder prediction 1 29 - -
Pral5893g00004 483 MobiDBLite consensus disorder prediction 128 187 - -
Pral5893g00004 483 SUPERFAMILY RING/U-box 412 465 - -
Pral5893g00004 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 469 IPR013083 -
Pral5893g00004 483 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 17 483 IPR044235 GO:0061630|GO:1904294
Pral5893g00004 483 SMART ring_2 422 459 IPR001841 -
Pral5893g00004 483 CDD RING-HC_RNFT1-like 420 460 - -
Pral5893g00004 483 Pfam Zinc finger, C3HC4 type (RING finger) 420 463 - -
Pral5893g00004 483 MobiDBLite consensus disorder prediction 133 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5893g00004 Pral-Chr5893 30402 36129 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5893g00004 47 483 C3H Transcription Factor Family AT5G01960 63.616 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5893g00004 - K22379 qsa:O6P43_020068 687.567