Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5893g00002 ATGGAAAATTATGTAGGACCTGCAAGGTGTTATCGTCAAATAAAAAACAAACCTTACCCTAAGTCACGCTTTTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGAATGAAGAGGAAAGGGGTTGATGAGTTTCCTTTCTGCGTCCATCTGGTTAGCTGGGAGAAGGAAAATGTTTCAAGTGAAGCGTTGGAAGCTGCTAGGATTGCTTGCAACAAATACATGGCCAAATTTGCTGGAAAGGATGCGTTCCATTTGAGAGTTAGGGTTCACCCATTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACAGGGATGAGAGGTGCATTTGGAAAGCCACAAGGTACATGTGCTAGAGTTGCCATCGGTCAGGTGCTTCTTTCTGTCCGTTGCAAGGACAGCAACAGCCATCATGCCCAGGAAGCTCTCCGTCGTGCTAAGTTCAAGTTCCCTGGTCGGCAAAAGATCATAGTTAGCAGGAAATGGGGTTTCACGAAGTTTAACCGAACAGACTATGTGAGGTACAAGTCAGAGAACAGAATTCTGCCAGATGGTGTAAATGCAAAGCTTCTTGGATGCCATGGACCACTGGCTAACCGTGAACCCGGGAGAGCTTTCCTGGAGCATGCAACTGCATAG 672 0.4613 MENYVGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYVRYKSENRILPDGVNAKLLGCHGPLANREPGRAFLEHATA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5893g00002 223 NCBIfam 50S ribosomal protein L16 7 176 IPR001197 GO:0003735|GO:0005840|GO:0006412
Pral5893g00002 223 CDD Ribosomal_L16_L10e 43 168 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pral5893g00002 223 PANTHER 60S RIBOSOMAL PROTEIN L10 7 215 IPR001197 GO:0003735|GO:0005840|GO:0006412
Pral5893g00002 223 ProSitePatterns Ribosomal protein L10e signature. 110 131 IPR018255 GO:0003735|GO:0005840|GO:0006412
Pral5893g00002 223 FunFam 60S ribosomal protein L10 5 208 - -
Pral5893g00002 223 Pfam Ribosomal protein L16p/L10e 14 168 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pral5893g00002 223 SUPERFAMILY Ribosomal protein L16p/L10e 7 175 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pral5893g00002 223 Gene3D Ribosomal protein L10e/L16 5 218 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5893g00002 Pral-Chr5893 20979 22242 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5893g00002 7 222 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.648 2.24e-140 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5893g00002 K02866 - pvy:116105818 438.343