Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5892g00045 ATGGGTAGACGAAAACAAAGTAGACCCCATCGATCTGGAGGGGTTATACTAGAAACACAGTCAACTGCTGGAACAGAACTGGATAAACAGAAAATCCTGGAAACAGGAGGACAAGCAAAGGAGGATTTTGGTGAAGTTCAAAATCCTTACTCTGTGGAAGTTGATAGGTCTAGTTGGTTATCAAACGAACACCTTGATATTTCTGAAGTTGTTCTAACTGATTTGAAGCTGGCAGAAGGCTTTTCTGGTCTTGAACTTTCCGAGGACTTTTATCAGGATTTCCAGTATTCCTTAAGATTTCAGGTGTTTAATGCCAATCATATTCTTGGTCGAATTAAACTGGGCCATTGGCCTATAGTGGCTTGTTCTGATATTCGTCTAGAGTTTGTAAGAAGAGTTATGGATCATATAGAAACATGTACAGTGCTGTTATCCGGGGTTTTTGATGGTCCCGATGAAGGTGTCTCTGGTCTTATTCACTTGGCAAGTTTGAAATTTATTACCTTGAGGCCAGTTCTTGGGATTAGGTTTTCTGAAGACATGCTCTCCCTTAGATTAAGGGTTGAGGTGCTAAAGAGTGCCTTTGATGCATGTGAGTCACTTCTAGATGGTTCCAGACAATTATGGAAGAAGAGTATGATGAATGTAATGTCTTGGCTACGTCCTGAAATTATGACATCAGAGCTTAGATATGGGGTTGGTAGCTATATGAAGGCGGAAGTGGATCCACAGACAGAGATCAGGGATGATAGTCGCTGCACCTGGAGACATGTGAGGTTTGATCCTGCAGGTTTCTATGAAGCCATTAGGCCTTCAAAATCAGAACCAATGCTTCGAGAAGACATACCAGACCTACTTCCTGAATTGAGACCATATCAAAGTCGTGCAGCTTTTTGGATGGTAGAAAGAGAGAAAAAAAGAGCTGGAGGTCAGGCGGAAAGAGAGAGAAGTCACTTTTATTCTCCTTTGTGTGTGCCTGTGGATTTTATTGACACGAGTTCTAAAATGTTCTTTAATCCATTCAGTGGAAGTATTTCATTGTCCTCAGAGACTCATGCACCTTGTGTGGCTGGAGGCATTCTTGCAGATGAGATGGGTTTGGGAAAAACTGTTGAACTTCTTGCTTGCATCTTTACTCATCGGAGATCAACATCTGAAAATGACATTCTTATTGACTCAGAGTTGCAAGTTAATGAGGATCGTGAGGTCAATTTTAAAAGACTTAAAAGAGACCGTGTGGAATGTTCATGTGGAGCTGTGAGTGAAAGTCTCAAATATAAAGGCCTATGGGTTCAATGTGACATTTGTGATGCGTGGCAGCATGCAGATTGTGTTGGTTATTCTCCTGAAGGAAAATCACTGAAATCAAAACAGGGATCTGGAAGCAAGAAATTTAGAAGCACCATAGCTGTGAGGGATGGAGAATATGTATGCCAAATATGCTCTGAACTAATACAAGCTACCGAATCTCCTATTGCTTCTGGTTCCACTCTTATTGTTTGTCCAGCTCCTATTTTGCCCCAGTGGCATGATGAGATTATCCGTCATACACGTCCAGGCTCCTTGAGAACTTGTATTTATGAAGGCGCGCGAGACACATCTTTCACCAATACATCGATGGTGAATATCAGTGAACTTGCCTCTGCGGACATTGTATTAACAACATATGATGTGCTTAAAGAGGATTTGTCTCATGATTATGATAGGCATGAAGGTGATAGGCACTTCTTGAGATTTCAAAAAAGGTACCCAGTTGTCCCAACTCTTCTTACCAGAATATACTGGTGGAGAATTTGCCTTGATGAGGCTCAAATGGTGGAGAGTAATGCTGCAGCTGCCACTGAAATGTCACTGCGGCTCAATGCAAAGTATCGTTGGTGCATTACAGGAACCCCCATTCAGCGAAAACTTGACGACTTGCATGGATTATTACGATTCCTTAAAGCTAGTCCTTTTGATATTTACCGTTGGTGGGCTGATGTTATTCGGGATCCTTATGAGAAGGGAGATGTTGGAGCTATGGAATTTACGCATAAAATCTTCAAACATATCATGTGGCGCTCTTCAAAAGACCATGTTGCAAATGAGTTGCAGCTTCCTTCTCAGGAGGAGTGCCTTACTTGGCTCACTCTCTCACCAGTAGAAGAGCACTTTTACCAAAGGCAACATGAAACCTGTGTTAACTATGCTCATGAAATTATTGAGAGTTTGAGAAATGACATTCGCAATAGAAGTGTCCCAGGTTCTTCTTCTTCTGAAGATTTTTCTGATTCTTTCATCACTCACTCAGAGGCTGGGAAGCTATTGAATGCACTGCTGAAGCTTCGCCAGGCTTGTTGTCACCCCCAGGTTGGAAGCTCTGGGCTGCGTACTCTGCAACAGTCACCCATGACCATGGAGGAAATACTGATGGTCCTTATAAGTAAGACTAAGATAGAAGGTGAGGAAGCTCTCAGGAGATCATGTGTTGCTTTAAATGGACTTGCTGCTATAAGCATAATGCAGAAGGATTTTTCTCAAGCAGCATTGCTGTACATTGAAGCACTGACTTTGGCCGAAGAGCATTCCGAAGACTTCCGCCTAGATCCTTTGCTAAATATTCACATTCATCATAACCTGGCTGAAATACTCCCACAAACTACAAACATTTCCCTTAAACTCCCCTGCAAAGGAAGGCAGTTCTCTAAAACTTCGCAACTTAACTCAAAAAAGCATACTCTTGAAAAGGTTGATTATTGTTTTGTTAAGAAGAAGAAAGGGAATGACTCTGATGATACGTATTTCAAAATGGCATCTGGAGAACCATTGAATATGACATCTAGTTTTTCAGAAAATGACTGGAGTGGGCATCAGGAATTTGATGGTGCACCTATCAGTTCTTTACAGTTCTTGATAGCAGAATGTGAAGATTTGAAACATAAATACTTATCTGTGTTCAGTTCAAAGCTATCTACTGTCCAACAGGAGTTTCAAAAAGTGCATTTGCAGGTTTGCAATGCATATAGTGAGAGTACAAACGCGCCTACAATTTGGTGGTTAGAGGCTCTTCATCATTCTGAACAGAACAAGGATTTTTCCGATGAGTTGCTTAGGAAGATTGAAGAAGCAATTGCAGGAACTTTAAACAATTCAAAGCGCCAAAGAGTTGCTACACGTTTCCGGAGCATACACTCTCTGAAGTATCAAGTCCAGACAGGTTTGGATCATTTAGAAGCTTCTAGGAAGGTGCTGCTTGATCGAATCTTAGAAATTGATCAGACTATGGACAGACCAAAAAACGAGGACATTGAACGTGTGGGTAAATGTCGAAATTGCCAACCTGCTTCTGATGGCCCGCCATGCATTTTGTGTGAACTTGATGAATTGTTTCAGGATTATGAAGCAAGGCTATTTGTTCTAAAGGATGAACGTGGAGGAATAATTTCATCTGCTGAGGAGGCAGTGGATTTGCAGAAGAAAAATTCTGCACTGAATCGTTTCCTTTCAAACCTATCACAGTCTAATCGCATTTCAAATGCATCTGATATTGGCCATCAAGAATCGAAGAAAAGAAATGTTGGAGAAAGAGTTGTGGTTTCAAGGTCAGCATCTCAATTGGAAGTAATTCTTGGTGTGTTGAAGAACTATTGCAAAGCTCGGTTGGGAAAAGATAGTATTTCAGCAGCCACCAAACATTTACATATTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCGAGGACTTTGGCTTTAGCCCAAGCTCAATATCTGCGTGCCCATGATGAAATTAAGATGGCAATTTCCCGGTTGCACCTGAAGGCAAATGAAAATGATAAGTCTCTTGATGCTCTAGGTGAAAATGAATTATGTGCAGCAAGTTCAAACTTTTCCCATGATAAGTTTATGTCCTTGGCCTCATTGTCACAAATAAAAGGAAAACTTCGCTACCTAAAGGGTTTGGTACAATTGAAACAACAGCCATCAGAACATCCAGAAAGTTCTTCATTTACTCCGGAGGCAACTGCAATGTCAAGTTTTACAGAAGAGATATTTATACCCGCATCTAAAGCTGATGAGGATTCATGCCCAGTTTGCCAAGAGAAGCTGGGCAGCCAGAAAATGGTTTTTCAGTGTGGGCATCTTACATGTTGTAAATGTTTATTTGCTATGACAGAGCAAAGGCTTCAAGATAGTAAGTTTCATAAATGGGTGATGTGCCCAACATGTCGACAGCACACAGATTTTGGAAACATTGCATATGCTGTTGATAGACAGCATGAATCCTTCAAAACTTCTGTGCTGCAGAATGTTGACAGCAGTGAGAAATGTGAATCATCCATCAGTGTTAAAGGTTCCTACGGAACTAAGATTGAAGCAATCGCAAAAAGAATCTTGTGGATCAAGTCTACAGACCCTAAAGCGAAAGTCCTTGTATTTTCTAGTTGGAATGATGTTCTTGATGTGTTGGAACATGCTTTTGCTGCCAATAGTATCACCTACATTCGGATGAAAGGAGGCAGAAAATCACACGTTGCCATCAGTCAGTTTAGAGGACAACAGAATGACAAGAGAGGAACATCCCAGGAATCGACATCAAAATTTATTCAGGTTTTATTAATTTTGATTCAACATGGAGCGAACGGGCTCAATCTTCTGGAAGCTCAACATGTGGTCCTTGTAGAGCCATTACTCAATCCTGCTGCTGAAGCACAAGCTATCAGTCGTGTGCACCGAATAGGACAGAAAAATAAGACTCTCATACATCGTTTCATTGTGAAAGACACAGTTGAAGAGAGCATATATAAGCTGAACAGAAGCAGGGCTAGCCATTCGGTCATCAGTGGTAACAAAAAAAATCAAGACCAGCCTATGTTGACCCTGAAAGATGTTGAAACCTTGTTAGCGACAGCTCCATTAACGAAACCAGGAAGTGATGAAAACCCCTCTGCAAGTCTAAGGCACTTGCCACCTTCAATGGCCGCTGCTATTGCTGCTGAGAGGAGATTCAATGAACAAAGGGCATGA 5004 0.4137 MGRRKQSRPHRSGGVILETQSTAGTELDKQKILETGGQAKEDFGEVQNPYSVEVDRSSWLSNEHLDISEVVLTDLKLAEGFSGLELSEDFYQDFQYSLRFQVFNANHILGRIKLGHWPIVACSDIRLEFVRRVMDHIETCTVLLSGVFDGPDEGVSGLIHLASLKFITLRPVLGIRFSEDMLSLRLRVEVLKSAFDACESLLDGSRQLWKKSMMNVMSWLRPEIMTSELRYGVGSYMKAEVDPQTEIRDDSRCTWRHVRFDPAGFYEAIRPSKSEPMLREDIPDLLPELRPYQSRAAFWMVEREKKRAGGQAERERSHFYSPLCVPVDFIDTSSKMFFNPFSGSISLSSETHAPCVAGGILADEMGLGKTVELLACIFTHRRSTSENDILIDSELQVNEDREVNFKRLKRDRVECSCGAVSESLKYKGLWVQCDICDAWQHADCVGYSPEGKSLKSKQGSGSKKFRSTIAVRDGEYVCQICSELIQATESPIASGSTLIVCPAPILPQWHDEIIRHTRPGSLRTCIYEGARDTSFTNTSMVNISELASADIVLTTYDVLKEDLSHDYDRHEGDRHFLRFQKRYPVVPTLLTRIYWWRICLDEAQMVESNAAAATEMSLRLNAKYRWCITGTPIQRKLDDLHGLLRFLKASPFDIYRWWADVIRDPYEKGDVGAMEFTHKIFKHIMWRSSKDHVANELQLPSQEECLTWLTLSPVEEHFYQRQHETCVNYAHEIIESLRNDIRNRSVPGSSSSEDFSDSFITHSEAGKLLNALLKLRQACCHPQVGSSGLRTLQQSPMTMEEILMVLISKTKIEGEEALRRSCVALNGLAAISIMQKDFSQAALLYIEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPQTTNISLKLPCKGRQFSKTSQLNSKKHTLEKVDYCFVKKKKGNDSDDTYFKMASGEPLNMTSSFSENDWSGHQEFDGAPISSLQFLIAECEDLKHKYLSVFSSKLSTVQQEFQKVHLQVCNAYSESTNAPTIWWLEALHHSEQNKDFSDELLRKIEEAIAGTLNNSKRQRVATRFRSIHSLKYQVQTGLDHLEASRKVLLDRILEIDQTMDRPKNEDIERVGKCRNCQPASDGPPCILCELDELFQDYEARLFVLKDERGGIISSAEEAVDLQKKNSALNRFLSNLSQSNRISNASDIGHQESKKRNVGERVVVSRSASQLEVILGVLKNYCKARLGKDSISAATKHLHIFEGMRKEFGHARTLALAQAQYLRAHDEIKMAISRLHLKANENDKSLDALGENELCAASSNFSHDKFMSLASLSQIKGKLRYLKGLVQLKQQPSEHPESSSFTPEATAMSSFTEEIFIPASKADEDSCPVCQEKLGSQKMVFQCGHLTCCKCLFAMTEQRLQDSKFHKWVMCPTCRQHTDFGNIAYAVDRQHESFKTSVLQNVDSSEKCESSISVKGSYGTKIEAIAKRILWIKSTDPKAKVLVFSSWNDVLDVLEHAFAANSITYIRMKGGRKSHVAISQFRGQQNDKRGTSQESTSKFIQVLLILIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIYKLNRSRASHSVISGNKKNQDQPMLTLKDVETLLATAPLTKPGSDENPSASLRHLPPSMAAAIAAERRFNEQRA 1667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5892g00045 1667 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1666 - -
Pral5892g00045 1667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1619 IPR027417 -
Pral5892g00045 1667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1342 1416 IPR013083 -
Pral5892g00045 1667 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1452 1624 IPR001650 -
Pral5892g00045 1667 CDD DEXQc_SHPRH 356 688 - -
Pral5892g00045 1667 Gene3D - 1417 1644 IPR027417 -
Pral5892g00045 1667 SUPERFAMILY RING/U-box 1338 1407 - -
Pral5892g00045 1667 Gene3D - 345 413 IPR038718 -
Pral5892g00045 1667 SMART ring_2 1355 1402 IPR001841 -
Pral5892g00045 1667 Pfam Helicase conserved C-terminal domain 1450 1573 IPR001650 -
Pral5892g00045 1667 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 487 650 IPR014001 -
Pral5892g00045 1667 CDD SF2_C_SNF 1446 1584 - -
Pral5892g00045 1667 SMART PHD_3 414 482 IPR001965 -
Pral5892g00045 1667 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Pral5892g00045 1667 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Pral5892g00045 1667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 414 481 IPR013083 -
Pral5892g00045 1667 Gene3D - 482 709 IPR038718 -
Pral5892g00045 1667 SMART helicmild6 1480 1573 IPR001650 -
Pral5892g00045 1667 Pfam Zinc finger, C3HC4 type (RING finger) 1355 1402 IPR018957 GO:0046872
Pral5892g00045 1667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 686 IPR027417 -
Pral5892g00045 1667 ProSiteProfiles Zinc finger RING-type profile. 1355 1403 IPR001841 -
Pral5892g00045 1667 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Pral5892g00045 1667 SMART ultradead3 285 657 IPR014001 -
Pral5892g00045 1667 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5892g00045 Pral-Chr5892 171569 188468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5892g00045 489 782 RAD5 or RAD16-like Gene Family AT5G22750 30.100 9.02e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral5892g00045 SNF2_N 2.5e-86 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5892g00045 K15710 - gmx:100776659 2560.41