Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5892g00044 ATGGAGAAGGAATTGGTCGAACTGTATGAAGCGGTAAAGAAGGCGGCTGACGTGGCGAGGTCAACCGATGGCGAAGTTGAAGAAAGCCGATGTCTTGATGCGTTCAAGCAGCTCAAGAAATTTCCGGTCAATTATCAAATTCTTGTGTCTACCCAGGTGGGTAAACATCTAAAAGTTCTAACAAAGCATCCAAGAAAGAAAATCCGGGCTTTTGCTGTTGACCTGATTGAGATATGGAAAGACATTATTATCAAGGAAACAAGCAAAAATAAGAATGGGAGCTCTCAGAATAATGTTGAGCTGTTAAATGGGGAGAAAGCCAAAGTTGAGAAGGTTCAGAAGACTCCCTCGGTAAAAGTTGAGAAGGTTTCAAAAGCTGACATTGTCAAGGTTGAGAAAACCGATAGGAATGGGACATCGAGCTCTGAATATGCAAAGAAGGAACAAGTTTCAGATGTTAGAAGTGAGAAAGGTTTCCCAGCGAATGTTAAGGTAGAAAAAATAGCCAAGGATGAGAAGCAAACTTCTGGAGTGAAGAAGGCATCCTCAAGCCCTGCTGCTCCGCCGAAGTTGAAAACTATGATTAAATCTAATGATGTGATGCGAGACAAAATAAGGGACATTCTCCAAGAGGCGTTCTCTAAGGTTTCTGGAGAGGCTGACGAAACAATCATGGATCAAGTTAATGGTTGTGACCCTATTCGGGTTGCTGTTACAGTGGAATCTGTACTATTTGAGAAGTGGGGTCCTTCTAATGGGGCTCAAAAGGTCAAGTATAGGTCCTTGATGTTTAACCTCAAGGATCCAAACAACCCAGATTTCCGGAGAAGAGTTCTGCTTGGAGAATTTGCACCAGAGCGACTCATCAACATGAGCACAGAAGAGATGGCTAGCGATCAAAGGAAGCAGGAGAACGAGAAACTGAAGCAGAAAGCTTTGTTTGAGTGTGAGCGTGGACAACAACCAAAAGCCACGACTGATCAATTTAAGTGTGGTCGATGTGGTCAAAGAAAGTGCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACGTGCGTTTCATGCAATAACCGCTGGAAATTCTGTTAG 1110 0.4333 MEKELVELYEAVKKAADVARSTDGEVEESRCLDAFKQLKKFPVNYQILVSTQVGKHLKVLTKHPRKKIRAFAVDLIEIWKDIIIKETSKNKNGSSQNNVELLNGEKAKVEKVQKTPSVKVEKVSKADIVKVEKTDRNGTSSSEYAKKEQVSDVRSEKAXFPANVKVEKIAKDEKQTSGVKKASSSPAAPPKLKTMIKSNDVMRDKIRDILQEAFSKVSGEADETIMDQVNGCDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDPNNPDFRRRVLLGEFAPERLINMSTEEMASDQRKQENEKLKQKALFECERGQQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVSCNNRWKFC 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5892g00044 370 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 24 370 - -
Pral5892g00044 370 NCBIfam transcription elongation factor S-II 14 370 IPR006289 GO:0003676|GO:0005634|GO:0006368
Pral5892g00044 370 Pfam Transcription factor S-II (TFIIS) 330 368 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pral5892g00044 370 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 99 IPR035441 -
Pral5892g00044 370 Gene3D - 173 298 IPR036575 GO:0006351
Pral5892g00044 370 SUPERFAMILY Elongation factor TFIIS domain 2 188 300 IPR036575 GO:0006351
Pral5892g00044 370 ProSiteProfiles TFIIS central domain profile. 202 325 IPR003618 GO:0006351
Pral5892g00044 370 SMART Cys4_2 330 369 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pral5892g00044 370 Pfam TFIIS helical bundle-like domain 36 83 IPR017923 -
Pral5892g00044 370 SMART mid_6 204 308 IPR003618 GO:0006351
Pral5892g00044 370 MobiDBLite consensus disorder prediction 173 192 - -
Pral5892g00044 370 SMART TFS2_5 8 85 IPR003617 GO:0005634
Pral5892g00044 370 FunFam Probable Transcription elongation factor S-II 299 370 - -
Pral5892g00044 370 PIRSF TFIIS 1 370 IPR035100 -
Pral5892g00044 370 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 3 98 IPR035441 -
Pral5892g00044 370 SUPERFAMILY Zinc beta-ribbon 309 368 - -
Pral5892g00044 370 ProSiteProfiles TFIIS N-terminal domain profile. 10 86 IPR017923 -
Pral5892g00044 370 CDD Zn-ribbon_TFIIS 323 369 - -
Pral5892g00044 370 ProSiteProfiles Zinc finger TFIIS-type profile. 328 368 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pral5892g00044 370 CDD TFIIS_I 9 83 - -
Pral5892g00044 370 Pfam Transcription factor S-II (TFIIS), central domain 199 316 IPR003618 GO:0006351
Pral5892g00044 370 ProSitePatterns Zinc finger TFIIS-type signature. 332 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pral5892g00044 370 Gene3D - 299 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5892g00044 Pral-Chr5892 167916 170729 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pral5892g00044 TFIIS_M 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5892g00044 K03145 - qsa:O6P43_014856 567