Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5892g00036 ATGTCTCTTCATCATCGTGCTCGCCGTCTTCTGCTGGATCATGATTCAAGCCCAATCCCACCAGATAGCGTATACAGGACGAGGATGACTTATACAAGTGACGCTAATTTTGACACCAACATGGTGATTATATTAGCAGCCTTGCTCTGTGCACTAATATGTGCTCTGGGTCTGAATTCAATAGTACGATGCGCTCTCAGATGCAGCCGAAGGTTGGCTTTTGAGACAGCAGAGGAGGCGGCAGCTCGTTTAGCTGCGAAAGGGCTGAAGAAGAGCGCGTTGCGTCAGATACCTATAGCTGTGTGTGGTTCATCAGGAGCTGAAATTACAGGCGCAGACTGTCCAATCTGCTTAGGGGAGTTCGTGGACGGAGAGAAAGTGAGAGTGCTTCCAAAATGCAACCATGGATTCCATGTGAAGTGCATAGACACATGGCTCCTTTCTCATTCCTCTTGCCCTACTTGCAGGCAGTCTCTTCACGAAACCACCATTTCTCAGGCTGTATCTGTACCTGCTGATCAGGCTGCCTAA 531 0.4896 MSLHHRARRLLLDHDSSPIPPDSVYRTRMTYTSDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRLAFETAEEAAARLAAKGLKKSALRQIPIAVCGSSGAEITGADCPICLGEFVDGEKVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLHETTISQAVSVPADQAA 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5892g00036 176 Pfam Ring finger domain 113 156 IPR001841 -
Pral5892g00036 176 PANTHER RING-H2 FINGER PROTEIN ATL78 7 167 IPR044602 GO:0016567|GO:0016740
Pral5892g00036 176 SUPERFAMILY RING/U-box 110 162 - -
Pral5892g00036 176 SMART FANCL_C_2 110 173 - -
Pral5892g00036 176 CDD RING-H2_EL5-like 113 156 - -
Pral5892g00036 176 SMART ring_2 114 155 IPR001841 -
Pral5892g00036 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 166 IPR013083 -
Pral5892g00036 176 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5892g00036 Pral-Chr5892 130315 131957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5892g00036 33 159 C3H Transcription Factor Family AT3G10910 65.185 4.04e-56 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5892g00036 K19040 - gmx:100787273 230.335