Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5891g00009 ATGGATTTCTCCAAGAAGCGCAAAGCCGAGGAGAACGGAATCGACGATTCTGTGCCCTCAACAACCCCGCTTGGCGCAGATGACATCCGCAAGATCCTCCAACCCTTCAATCAAGAACAGCTTATCGACCTGCTTCTTTCAGCTGCTCTTCATCACCCTGACGTTCTTGAGTCGATACGTTCCGTCGCCGACCGTGATTCCACCCTTCGGAAACTCTTTGTTCGGGGGCTTGCAGGGGAAACCACCACGGAGACACTTAGCAGTGTTTTCTCCTCCTTTGGGGTGCTCGATGAGGCGATTGTTATCTTCGACAAAACGACCGGGAAGTCCAAAGGATACGGCTTTGTGACGTTTAAACACGTTGATGGTGCTATATTGGCTTTGAAAGAGCCCAGCAAGAAAATTGACGGGAGAATGACGGTGACCCAGCTTGCAGCTTCTGGATTGTCGGCCAGTCAAGGGACTAATGCGGCTGCCGCAGCTGCAAGTGATGTTTCTGCCCGAAAAATTTTTGTGGGCAATGTACCGTTTGATATTTCGTCGGAGAGGCTGTTGAGTTACTTTTTGGCTTATGGGGAAATCGAAGAAGGGCCTCTTGGGTTTGACAAAGCTAACGGAAAGTCCAAAGGTTTTGCGTTCTTTGTGTACAAAACGGAGGAGGGTGCTAGGGCGTCTCTAGTTGAGCCAGTCAAGACTATTGATGGGCATCAAGTGCTTTGTAAATTGGCCATGGATAACAAAAAGGGGAAATCAGGAGGAGCTCCTAACCAGGGCCCTGCTGGGTTACCAGGTAATGGCATGGCAGCACAACAGCCGCAACCATCTTTACCTGGCCCTATGATGGGATCAAACTATGGGGGTCATGGCCCTTCATATGGGGGATTTGGTGGTGCGCATCAGGGCCCTATGGCTATGCCTAGTAATAATTATGGATTGCAGTCTTCATTGCCGCCGTATGGGACGCAGGTTCCATCTACCTTAACTCCTAATAGCGGTGGGGGGTACGGTCCTGGTATTGGAGGGGCTTATAGTGGCTCTCAGTTCAGTGGGCCTACTTCTGGTGATTATGGCGCTAGGCTGCCTTCATCCTCTGCTGGAATGCCGACCGGAGGATATCCAGATGGTTCGCATTATAATTTGCCCTCATCTGCTGTTCCCTCTCAGCATCAACAGCCCATGCAAATGCCAAGGATGGCTCCAGGAGGAATGTACCAAGGCATGCCGCCATACTACTGA 1236 0.5097 MDFSKKRKAEENGIDDSVPSTTPLGADDIRKILQPFNQEQLIDLLLSAALHHPDVLESIRSVADRDSTLRKLFVRGLAGETTTETLSSVFSSFGVLDEAIVIFDKTTGKSKGYGFVTFKHVDGAILALKEPSKKIDGRMTVTQLAASGLSASQGTNAAAAAASDVSARKIFVGNVPFDISSERLLSYFLAYGEIEEGPLGFDKANGKSKGFAFFVYKTEEGARASLVEPVKTIDGHQVLCKLAMDNKKGKSGGAPNQGPAGLPGNGMAAQQPQPSLPGPMMGSNYGGHGPSYGGFGGAHQGPMAMPSNNYGLQSSLPPYGTQVPSTLTPNSGGGYGPGIGGAYSGSQFSGPTSGDYGARLPSSSAGMPTGGYPDGSHYNLPSSAVPSQHQQPMQMPRMAPGGMYQGMPPYY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5891g00009 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 256 IPR000504 GO:0003723
Pral5891g00009 411 MobiDBLite consensus disorder prediction 1 22 - -
Pral5891g00009 411 Gene3D - 61 150 IPR012677 -
Pral5891g00009 411 SMART rrm1_1 71 143 IPR000504 GO:0003723
Pral5891g00009 411 SMART rrm1_1 169 241 IPR000504 GO:0003723
Pral5891g00009 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 147 IPR000504 GO:0003723
Pral5891g00009 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 138 IPR000504 GO:0003723
Pral5891g00009 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 236 IPR000504 GO:0003723
Pral5891g00009 411 SUPERFAMILY RNA-binding domain, RBD 161 264 IPR035979 GO:0003676
Pral5891g00009 411 MobiDBLite consensus disorder prediction 345 359 - -
Pral5891g00009 411 MobiDBLite consensus disorder prediction 246 276 - -
Pral5891g00009 411 SUPERFAMILY RNA-binding domain, RBD 60 145 IPR035979 GO:0003676
Pral5891g00009 411 PANTHER GEO13361P1-RELATED 53 299 - -
Pral5891g00009 411 MobiDBLite consensus disorder prediction 344 374 - -
Pral5891g00009 411 Gene3D - 151 298 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5891g00009 Pral-Chr5891 33413 37361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5891g00009 160 367 C2H2 Transcription Factor Family AT2G19380 29.384 1.89e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5891g00009 K12741 - zju:107411269 479.944