Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5884g00003 ATGGCCAAGGATACGGTAATAGAGCTTCCTCCTCGCGACGATTGCTGCCCCGTCTGCCATGGCGATTTCAACCTCCCATGCCGCACCTCTTGCTCGCACTGGTTCTGCGGAGAGTGCATATTGCGTGTATGGCTTCATGGAGATGCAACAAAGCAATGCAAATGCCCAATGTGCTGTCGTCATTTTTCCAGTCTGGCGCCCGTTCAAGCAGCATTTGACCGTAGCCAGAACCCAGAATCAAATAAAATCATGGAAAATGTGAGAAGGTACAACAGGTTGCACATTGGGGGCATGCAAGGTCTCATGCAGAAATTTTTTGATCTCCCATTTTTTATTCGGATGGCTCTACAAGATATGATGGATCCTGATAAAACAAGTTCTTACTTGACTAGAGTTCGTCTCTTTGCAATGGCCCTCGGCATGATGTATGTGCTCAACCCATTCGAATTTCTTCCATTCGCTAAACGAGACATATTAAATTTGTTTGACCTCTATGCAACGACATTTGTCACTATCATCCACGTCATCGCGCTGTGCCGTGCAAGGCGTGTAATCAGGCGATAA 564 0.4663 MAKDTVIELPPRDDCCPVCHGDFNLPCRTSCSHWFCGECILRVWLHGDATKQCKCPMCCRHFSSLAPVQAAFDRSQNPESNKIMENVRRYNRLHIGGMQGLMQKFFDLPFFIRMALQDMMDPDKTSSYLTRVRLFAMALGMMYVLNPFEFLPFAKRDILNLFDLYATTFVTIIHVIALCRARRVIRR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5884g00003 187 SMART ring_2 16 58 IPR001841 -
Pral5884g00003 187 PANTHER UNCHARACTERIZED 6 183 IPR038896 GO:0061630
Pral5884g00003 187 ProSiteProfiles Zinc finger RING-type profile. 16 58 IPR001841 -
Pral5884g00003 187 SUPERFAMILY RING/U-box 12 67 - -
Pral5884g00003 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 96 IPR013083 -
Pral5884g00003 187 Pfam Zinc finger, C3HC4 type (RING finger) 16 58 IPR018957 GO:0046872
Pral5884g00003 187 ProSitePatterns Zinc finger RING-type signature. 31 40 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5884g00003 Pral-Chr5884 10126 13744 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5884g00003 8 137 C3H Transcription Factor Family AT4G33940 44.615 8.37e-44 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5884g00003 K15707 K24166 cave:132168217 241.121