Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5877g00016 ATGGCGGAGATTGTGATATCAATCGGGTCAAGGCTTGCAGAATATTTGGTGGCTCCAATTTCAAAAGGAGCTACTTATTTGTTCTGTTTCAAGCAGTTCATTGGAGGTGTTGAGAAAGCAAAACAAGAGCTGGAGGAGAAACTAGAAGACGTGAAAAAGCGCAAGGAAGAAGCTGATCGAAAAACTGAAGAAATAATGCCATCCGTGAAGAAGTGGTTGGACGATGTGAATGCAATCCTAGAAGAGGTGCAAAAGCTGCAACAAGAGCTTGAAGGAGGACGAAACAAGTGTTTTAATGTGTCGCTCAGATATTCTTTAGCAAAACAAATGGAAAATAAGGCTAAGCAAATGACAGATCTCAAACAAAATTCCAGCTTTGAGCCATTTTCCCAACTGATCCAACTTCCTGGCATTACTTACTTCTCTTCCAAAGAGTTTATGGCTTTCAACTCAAGGATATCAACTTATAATCGTCTTTTGGAGGCAATTATAAATGGCAAAAACAAGATGGTGGGACTGTATGGTATGGCGGGCTCAGGCAAAACCACTTTGGCAACGGAAGTGGGCAAGAAAGTGGCTGAATTGAAGCTTTTTGACAAGGTCATCAGGGTAGTTGTTTCTAAACCCCCAAATATTCTGAACATTCAGCAGGAAATAGCGGGGCAAATAGGCTTGCCACTTCAAGAGGCAACTCAGCCTACTAAAGCACAAAGGCTATCAGAAGGATTGAAAAATAAGAAGATTCTTATAATCCTGGATGATGTGTGGAAGCATCTAAACCTTGAAGATATTGGCATTCCACTTGTTGAAGGTTGTCATATCTTGTTAACAACTCGCCTTCGAGATGTATGTGTCTCTATGGATTGTGAGCCTATGATTGAACTACCTTTGATAACTAAGGGGGAGGCATGGGACTTATTCAAGAAGCATGTAAACCTAGGCAACGATCCCTCAAATATGTTTGGTGATGTGGGAGGGAAAATTGTTGATGAGTGCAAGGGGTTGCCAATTGCAATTGTAGCAGTTGGAACATCTTTAAAGGGAAAACATATTGAAGTATGGGAATCAGCATTATGGAGACTAAAACACTTCCAACCGTTGAATGTTGGACAAGGTCTTGCGAGTGCTTATGCATGCCTCAAATTGAGTTATGATAGTTTGCCAAGTTCCACAGCCAAGTCGCTTCTCTTATTATGCTCTATGTTCCCTGAAGATCATGAAATTCACAAAGAAGATTTAATTCGATTTGGCATGAGGACACTTGAGCCGGAGGAGTCTATTTTCACAATAGAGGGTGCAAGGAGAGTGATTTTTGATGCTCTTGAGATATTGTTGGATTCTTGTTTGTTAATGAGTATAGAGAAGGAAGCATGTGTAAAAATGCACGACTTAGTTCGAGATGTAGCCTTGTGGATTGCAAAGAAGCAAGGTCAGGAGATTTTGGTGGACAGCAGTGAAGTTTCAAACATTTTGCTTGGCAATCGCCAAAATTTGAAAGATACAAAAGCACTGTCATTGTGGAATCTGGATGCGGATTTCAATCTCTCGGATCAATTGCATTGTTCAACACTAGGGATTTTGCTACTTCAACCTGATGGGTTTATTGAAGATCTGGGAGCAATAAAAGCACTCAAAGTCTTGGCACTCATAGAATATGGCTTTGAATGGGGATTTAGGAAGGGATCATCTGTTTGTTCAATCCCACAATCAATTGTGTCTTTAACATATCTTCACACCTTATGTATTAGAGGGAAAAAGTTGGGTGATATCTCTCTACTGGGTGAACTCAAAACACTGGAGATTCTTGACTTACGTGGTTCTCTATTTGATGAATTGCCTGTTGGAATTGTAGATATGAAAATGTTGAAACTTTTGGACATATATGATTGTCGAATTGAGAAAAGTCCTATAGAAGTAATTGGTAGATGTGAGCAGCTTGAAGAATTATATTTTTTGGAACACAAATCTGTCATCCCACATAATTTCTCTCTTTCAAGATTGAAGAGGTATGTTCTCTATGACTCCACATGTAGTATATATTCGTATACATGA 2052 0.3957 MAEIVISIGSRLAEYLVAPISKGATYLFCFKQFIGGVEKAKQELEEKLEDVKKRKEEADRKTEEIMPSVKKWLDDVNAILEEVQKLQQELEGGRNKCFNVSLRYSLAKQMENKAKQMTDLKQNSSFEPFSQLIQLPGITYFSSKEFMAFNSRISTYNRLLEAIINGKNKMVGLYGMAGSGKTTLATEVGKKVAELKLFDKVIRVVVSKPPNILNIQQEIAGQIGLPLQEATQPTKAQRLSEGLKNKKILIILDDVWKHLNLEDIGIPLVEGCHILLTTRLRDVCVSMDCEPMIELPLITKGEAWDLFKKHVNLGNDPSNMFGDVGGKIVDECKGLPIAIVAVGTSLKGKHIEVWESALWRLKHFQPLNVGQGLASAYACLKLSYDSLPSSTAKSLLLLCSMFPEDHEIHKEDLIRFGMRTLEPEESIFTIEGARRVIFDALEILLDSCLLMSIEKEACVKMHDLVRDVALWIAKKQGQEILVDSSEVSNILLGNRQNLKDTKALSLWNLDADFNLSDQLHCSTLGILLLQPDGFIEDLGAIKALKVLALIEYGFEWGFRKGSSVCSIPQSIVSLTYLHTLCIRGKKLGDISLLGELKTLEILDLRGSLFDELPVGIVDMKMLKLLDIYDCRIEKSPIEVIGRCEQLEELYFLEHKSVIPHNFSLSRLKRYVLYDSTCSIYSYT 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5877g00016 683 Gene3D Ribonuclease Inhibitor 472 678 IPR032675 -
Pral5877g00016 683 Gene3D - 298 383 IPR042197 -
Pral5877g00016 683 FunFam Probable disease resistance protein At1g61300 149 291 - -
Pral5877g00016 683 Gene3D - 384 470 IPR036388 -
Pral5877g00016 683 SUPERFAMILY L domain-like 460 668 - -
Pral5877g00016 683 PRINTS Disease resistance protein signature 332 346 - -
Pral5877g00016 683 PRINTS Disease resistance protein signature 617 633 - -
Pral5877g00016 683 PRINTS Disease resistance protein signature 170 185 - -
Pral5877g00016 683 PRINTS Disease resistance protein signature 242 256 - -
Pral5877g00016 683 Gene3D - 140 292 IPR027417 -
Pral5877g00016 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 399 IPR027417 -
Pral5877g00016 683 Coils Coil 34 64 - -
Pral5877g00016 683 Coils Coil 69 96 - -
Pral5877g00016 683 SMART AAA_5 167 299 IPR003593 GO:0016887
Pral5877g00016 683 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 37 660 - -
Pral5877g00016 683 Pfam NB-ARC domain 158 385 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5877g00016 Pral-Chr5877 305421 307472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5877g00016 152 479 WRKY Transcription Factor Family AT5G45050 24.340 1.03e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5877g00016 - - pcin:129306241 812.372