Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5877g00003 ATGAACTCAACAGTGCCCCCATGGAAGTACCATGTCTTCTTGAGCTTCAGGGGAGAAGACACCCGCAATAGCTTCACAGGTCACTTACATGCTGCTCTTGAACGAAGAGGTATCATAACTTTCATAGATGATGAACTTAGTAAAGGAGAAGATATCTCCCAAGAACTCCTCCAAGCCATTGAAGAATCTCTCGTCTCCATTGTTATTCTTTCCCCAAGCTATGCTTCTTCTCGTTGGTGTTTGGCTGAACTCCAAAAGATTCTTGAATCCAAGCGATCTTTGGGAAGAGAAGTCGTTCCAGTGTTCTTTAACATAGATCCATCTCATGTGAGACATCAAAGAGGTGCCATTGGAGATGCCTTTAAAAGCCACAGGGAGAGATTTGCTGACAAGGTCCAAGGATGGAGAGATGCTTTGCGTGAAGCTGCAAATATATCAGGCTACGACTGCAACCACCGGCATGAAGCAAAACTCATTGAAGAAATTACAGCAGAAGTATGGGCAAAAGTACACCCTAAATTACCATATTGTTTCAACAATGAGCTTGTTGGCATTGAATCAAGAGTAGAAGCAGTGAATTCACTGTTAGAGATTGGATTATGTGATGTTCGCTTAATCGGAATATGGGGCATGATTGGTGTTGGAAAGACAACTCTTGCAAGAATCATCTATGAGAGAATATTTCGCCAATTTGACGTCAGCTGTTTTCTTGCAAATGTGAAAGAAAGCTCTGAGGCCAATGGTTTGGTAGCTTTGCAAAGAAAACTTCTTTCCAAAATTAAGATACAAGCCATAGAAGTTGATGATACATATGAGGGAAAGAATATAACAAGAAACCTGCTATGCAATAAAAGAGTTCTAGTTGTCTTGGATGACGTAAGTGAAATAAACCAATTAGAGAACCTCTGTATAAAGCAAGCTTGGCTGGGTCCTGGGAGTAGAGTAATCGTGACAACTCATAATATGCATGTATTGATAGAGCATGGAGAATTTCAAATTTATGAGGCTGAACTGTTAAACAATGAAGAATCTCTCCAACTCTTCTGCAAGAAGGCTTTTAAAAGGGATGAACCTATAGAAGGTTATTCGGAGCTGTGCACAGACATCATCCACCATGCTGAGGGCCTTCCTTTAACTCTTGAAGTGCTGGGTTCTTATTTTTGTGGAAGAAGTGAACTTGAATGGAAAGAAGGTTTGAAGAAGATTAAAAAGTTTCCACCAAGCAATATTCTAAAGAGGCTTAGAATCAGTTATGATGCATTAAGTGATACGGAAAAGAAAATATTTTTAGATGTTGCTTGTTTGTTCAAGGGAATGATCAGAGACCAAGTGACACAAATATTTGAAATATGTGGTGATCTTTATCCAACGCTTGGAATAAGAGAACTTGTTGAGAAATGCTTGTTGACAGAATATTATAGTAATGATGGTGCATGTCGTTTGGGTATGCACGATATCCTTCAAAAATTGGGCAGAAGTATTGTTGTAGAGGAATCACCTAATGATGCTGGCAGACGTAGCAGACTATGGTCATTAGAAGATATTGATCATGTCATGTCAAAAAACAAAGGCACTGGTTTGGTAGAAATTATACATCTTCAATCACCTATGCCATATGAAGCGAGTTGGGACCCAGAAGCATTCTCTGCGATGCGTAGCCTTACTATACTCATCATATCATGTGATGTGTACCTTCCTCGAGGTCTCAAATTTCTTCCCAGTTCATTAAAATTTCTTGATTGGAAGGCTTATCCCTTGAAATCTTTGCCCCATTGTGCTCATCTTGATGAGCTTGTGCTCCTTAGAATGCATCATAGCAAGATCACACAAATTTGGGGGAGTACACAAATGTCAAAAAGGTTAAAGTTCATTGATTTAAGCTATTCTGAAGATTTCGTACGAACTCCTGATTTCTCGATGCTACCCAACCTTAAGCAATTAATTCTTGAAGGTTGCGCAAAACTCACTGAAGTTCACCCATCACTTGGACAACATAAGAAACTTGTTGTGCTGGATTTGAAAGATTGCAAGAATCTTAAAGCTCTTCCAACTAGAATGGAAATGGACTCACTGAATAAATTGATCCTTTCAGGGTGCTTGAAAATTAAAAAACTTCCAGAGTTTGGGAAAAATATGAGCAACCTGTTGGTTCTTGATGTGAAAAATTGCAAAAGTCTAGTTTGCCTCCCAAGTTCTACTTGTAACTTGAAATCTCTAAAAACTCTCATTATTTTAGGTTGCTCAAAATTTTCCTTGTTGCCAGAAAATTTGAATGAAAATAATTGTCTAGAGGAGCTTGATTTGAGTGAAACTGCTATTAGAGAAATACCTTCATCCATCATTGGCCTACAAAATTTGAAGCTATTATATTTGAAAGGATGTAAAGGTCTAAGTTCAAGATCCAATTCATTAGCAATGAGCTTGCTTTCCCCAATTCAAGAGGTGTTTGGGTTGCATTCTGAAGCTCCCAGAAGATCCTTGTTTTTTTCTTTCATCTCAAGTCTAGCAACTTTGAAGGAATTGCGTTTAGATGACTGTAACCTGAGAGTTGGATCAATTCCAGATGAACTTGGCTGCTTAACATCATTGGAGTTACTTGTTCTAAGCGGAAATGATTTTGGCGGCAATGGATCTACTGATAATTGGATACTTCCTCCTTCATTCTCACGTCTTTCTTCATTGAAGTATTTATACATATGTAAGTGTAATCTCAATGATGGTTCAATTCCTAATGACCTTAATAGCTTATCAGCATTGGAAAAACTTGGTTTGTTAGGAAACAATTTCACACATATACCTGCTGGTTGTATATCTAACCTCTTGCGTCTGCATACTCTTCATTTGAGTCACTGCCCACGGCTCAGGTGTTTGCCAAATCTTCCACCAAATTTACGACGTATAGATACTGTTGCCTGTCATTCAATGCAACCTTTGTCATTTCCAGAGTTACTATTGAAGTGCATTGCTTTCGCAAATGGTTTTGTGGAATCTTTTCCTCATATGCACACAAATAACGTGAGATTTGCCATCTGGTGGGTTCTGGGAAGTGAAATCCCATCATGGTTCCACAATCAAGACTTTCAATACCTTCATAAAATTGATGGGTTTCAAGATAACCATGTTGTCCGAACTTCTGAGGAAGAAATCTCAGATCAAAGTTTTCGCGAAATTAAGAACGGTGGTTTTTTACACGCTGATTCCATTGTGTCAATGGAAGTAGATATCAATGATTTTCGTGGTTCAAGTGAAAGTTGCGGAATTTCTCTTTGCATTGTTCTACAAGATATGGACCTTGATGATGTGTTTGATCTTTTATACCTTAAGATGACTTGTAGAGCTTCAGCAGATGAATTCTTCAAAGAAGAGATACGATGGCGTGTTTCTTTTGAAGGCCATTCCCACCAAATTTTCATCATGTACTTGCCCCTAAGCAATTTTGCAGCTGATTGCAACAAGATTGAAGTCATATTTTACACTACTCGAATTATGCGCGAAGACATGGAAGCAGAATTGGATGTGAAAGCTGACTGTGGAGATCATGGCAAGTTTATAACAAGCAAGTGTGGCTGGCGAGTGACACGAAAGGAAGATGTAGAAGAATGGCTCAGAAAAATCCAACAATGCAGCAGTACCGGTGAAAACAAGGAAATCCTTTCCCAAGAATCTGTTCGTGGAAGAAAGAGATACCATGAAGGGGAAGATCAGCAAGGAGAAGTCACTGTTAGTGATGTGGAAACTGAAACTTGGTGTTTGGATGAGCTTGAAAGGATTCTTGAATCTAAAAGATCTTTGGGTAGAGAAGCTATCCCAATCTTCTGTAAGGTTCATCCATCTGATGTGCGTCGTCAAAGAGGTAGCTTTGGTCGTGCCCTTCAACAGCATGCTGAGAGATTTGCTGGAAACAAAGAGAAGCTGAAGAGGTGGAAAGACGCCTTCGAAGAAGTTGCAAATATATCTGGCTATGACTCTACGGATCAGCATGAAGCAAAACTCATTGAAGAAATTACAGCAGAAGTATGGGCAAAGGTACACTCTAAATTGCCATATTATTTCAGCAATGAGCTTGTTGGCATTGAATCAAGAGTAGACGCAGTGAATTCACTTTTAGAGATTGGATTACGTGATGTTCGCTTAATCGGAATATGGGGCATGACTGGTATTGGAAAGACAACTCCTGCAAGAATCATCTATGAGAGAATATTTTGCCAATTTGATGTCAGTTGTTTTCTTGCAAATGTGAAAGAAAGCTCTGGGGCCAATGGTTTGGTAGCTTTGCAAAGAAAACTTCTTTCCACAATCAAGATAAAAGGCCTAGAAGTTGATGATACATATGAAGGAAAGAATATAACAAGAAACCTGCTATGCAATAAAAGAGTTCTAGTTGTCTTGGATGACGTAAGTGAAATAAACCAATTAGAGAACCTCTGTATAAAGCAAGCTTGGCTGGGTCCTGGGAGTAGAGTAATGTGA 4470 0.3897 MNSTVPPWKYHVFLSFRGEDTRNSFTGHLHAALERRGIITFIDDELSKGEDISQELLQAIEESLVSIVILSPSYASSRWCLAELQKILESKRSLGREVVPVFFNIDPSHVRHQRGAIGDAFKSHRERFADKVQGWRDALREAANISGYDCNHRHEAKLIEEITAEVWAKVHPKLPYCFNNELVGIESRVEAVNSLLEIGLCDVRLIGIWGMIGVGKTTLARIIYERIFRQFDVSCFLANVKESSEANGLVALQRKLLSKIKIQAIEVDDTYEGKNITRNLLCNKRVLVVLDDVSEINQLENLCIKQAWLGPGSRVIVTTHNMHVLIEHGEFQIYEAELLNNEESLQLFCKKAFKRDEPIEGYSELCTDIIHHAEGLPLTLEVLGSYFCGRSELEWKEGLKKIKKFPPSNILKRLRISYDALSDTEKKIFLDVACLFKGMIRDQVTQIFEICGDLYPTLGIRELVEKCLLTEYYSNDGACRLGMHDILQKLGRSIVVEESPNDAGRRSRLWSLEDIDHVMSKNKGTGLVEIIHLQSPMPYEASWDPEAFSAMRSLTILIISCDVYLPRGLKFLPSSLKFLDWKAYPLKSLPHCAHLDELVLLRMHHSKITQIWGSTQMSKRLKFIDLSYSEDFVRTPDFSMLPNLKQLILEGCAKLTEVHPSLGQHKKLVVLDLKDCKNLKALPTRMEMDSLNKLILSGCLKIKKLPEFGKNMSNLLVLDVKNCKSLVCLPSSTCNLKSLKTLIILGCSKFSLLPENLNENNCLEELDLSETAIREIPSSIIGLQNLKLLYLKGCKGLSSRSNSLAMSLLSPIQEVFGLHSEAPRRSLFFSFISSLATLKELRLDDCNLRVGSIPDELGCLTSLELLVLSGNDFGGNGSTDNWILPPSFSRLSSLKYLYICKCNLNDGSIPNDLNSLSALEKLGLLGNNFTHIPAGCISNLLRLHTLHLSHCPRLRCLPNLPPNLRRIDTVACHSMQPLSFPELLLKCIAFANGFVESFPHMHTNNVRFAIWWVLGSEIPSWFHNQDFQYLHKIDGFQDNHVVRTSEEEISDQSFREIKNGGFLHADSIVSMEVDINDFRGSSESCGISLCIVLQDMDLDDVFDLLYLKMTCRASADEFFKEEIRWRVSFEGHSHQIFIMYLPLSNFAADCNKIEVIFYTTRIMREDMEAELDVKADCGDHGKFITSKCGWRVTRKEDVEEWLRKIQQCSSTGENKEILSQESVRGRKRYHEGEDQQGEVTVSDVETETWCLDELERILESKRSLGREAIPIFCKVHPSDVRRQRGSFGRALQQHAERFAGNKEKLKRWKDAFEEVANISGYDSTDQHEAKLIEEITAEVWAKVHSKLPYYFSNELVGIESRVDAVNSLLEIGLRDVRLIGIWGMTGIGKTTPARIIYERIFCQFDVSCFLANVKESSGANGLVALQRKLLSTIKIKGLEVDDTYEGKNITRNLLCNKRVLVVLDDVSEINQLENLCIKQAWLGPGSRVM 1489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5877g00003 1489 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 706 IPR044974 GO:0006952
Pral5877g00003 1489 SMART LRR_typ_2 860 891 IPR003591 -
Pral5877g00003 1489 SMART LRR_typ_2 641 665 IPR003591 -
Pral5877g00003 1489 SMART LRR_typ_2 916 939 IPR003591 -
Pral5877g00003 1489 SMART LRR_typ_2 763 783 IPR003591 -
Pral5877g00003 1489 Pfam NB-ARC domain 1362 1479 IPR002182 GO:0043531
Pral5877g00003 1489 Pfam NB-ARC domain 189 406 IPR002182 GO:0043531
Pral5877g00003 1489 Gene3D Ribonuclease Inhibitor 820 1101 IPR032675 -
Pral5877g00003 1489 SUPERFAMILY L domain-like 827 968 - -
Pral5877g00003 1489 SUPERFAMILY Toll/Interleukin receptor TIR domain 1248 1321 IPR035897 -
Pral5877g00003 1489 Gene3D Ribonuclease Inhibitor 541 686 IPR032675 -
Pral5877g00003 1489 Gene3D - 339 427 IPR042197 -
Pral5877g00003 1489 Gene3D - 5 171 IPR035897 -
Pral5877g00003 1489 Gene3D - 1241 1343 IPR035897 -
Pral5877g00003 1489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1345 1489 IPR027417 -
Pral5877g00003 1489 Gene3D - 1344 1489 IPR027417 -
Pral5877g00003 1489 Gene3D - 172 330 IPR027417 -
Pral5877g00003 1489 ProSiteProfiles TIR domain profile. 8 170 IPR000157 GO:0007165
Pral5877g00003 1489 Pfam TIR domain 9 184 IPR000157 GO:0007165
Pral5877g00003 1489 Pfam TIR domain 1247 1354 IPR000157 GO:0007165
Pral5877g00003 1489 Gene3D Ribonuclease Inhibitor 687 816 IPR032675 -
Pral5877g00003 1489 SMART till_3 1203 1318 IPR000157 GO:0007165
Pral5877g00003 1489 SMART till_3 9 145 IPR000157 GO:0007165
Pral5877g00003 1489 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 148 IPR035897 -
Pral5877g00003 1489 SUPERFAMILY L domain-like 484 874 - -
Pral5877g00003 1489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 431 IPR027417 -
Pral5877g00003 1489 PRINTS Disease resistance protein signature 373 387 - -
Pral5877g00003 1489 PRINTS Disease resistance protein signature 280 294 - -
Pral5877g00003 1489 PRINTS Disease resistance protein signature 710 726 - -
Pral5877g00003 1489 PRINTS Disease resistance protein signature 205 220 - -
Pral5877g00003 1489 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5877g00003 Pral-Chr5877 90880 111446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5877g00003 10 807 WRKY Transcription Factor Family AT4G12020 30.870 1.23e-96 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5877g00003 - - pcin:129317909 1531.15