LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5875g00012	ATGGCGAGTTTTCTCATACGTAATCACTCGGACCAGCTCCGTTGCATTGCGTCTTCTCCAGATTTCAAGCTTCATTACCCTCTCTTCGTCGATTTCGCAGAGCTGATGGATGATGACCCTCATCTTGCCCACCTCATCTTCACCGAACCCGCTACATATTTACAAATATTCGACCAGGCTGCTGTTTGGGCTCATAAAATCATATTGGGAGATCCGGGAGCAGACAAGAATTGGGTTGAGAAAAAGACGATTCATGTCCGCATCAATACAAGTGGCTCTCCACTTGAATGCCCAGTAATCAGGTCAGGAGCAATAAAGATGCATGAAGGAGAGAGGGAGTACATGTGCCTAAAGTGCAAGAAGAGCTTCCTAGTTTATCCAGAGGTGGAAGCACGAAACTCCATAACACTACCTTCAGTTTGCCAAGTTCGGGGGTCTAAGCCCTGCGGAGGAACAAAATTTCAGTATGTAGATAGTACTATAGTATGCCATGATTATCAAGAGATTAAAATCCAAGAAAGCACGCAAGTTCTTGGTGTTGGGGTGATTCCTCGTTCAATTCTTGTCATCTTGCAAGATGACCTTGTTGACATTGTTAAAGCTGGAGATGATGTGATTGTTACTGGGGTGCTAACAGCAAAATGGTCATCAGAAGTCAAAGATGTACGCTGTGACCTTGATCCTGTACTGATAGCCAATCATGTAAGGAGAACAAATGAACTGAAGTCAGAAATTGATATTCCTGATGATGTTGTTATGAAATTCAAACAGTTCTGGATCCATTTTAAGGAATGTCCTTTGAAAGGGAGGAATGCTATTTTACGAGGAATTTGCCCACAAGTATTTGGGCTCTTCACTGTCAAGCTGGCAGTTGCATTAACACTTATTGGAGGTGTGCAACGTGTCCATGCTTCTGGAACGAAGTTACGAGGGGAACCCCACTTACTCTTAGTTGGTGATCCTGGCACAGGGAAATCTCAGTTTTTAAAATTTGCAGCAAAATTGAGCAATAGATCTGTAGTTACCACTGGCATGGGTAGCACCAGTGCTGGATTGACTGTTACTGCAGTGAAGGATGGAGGAGAATGGATGTTGGAAGCTGGAGCCCTTGTTCTGGCAGATGGGGGGTTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACCATACATGAAGCCATGGAACAGCAGACCATAAGTGTTGCCAAGGCTGGTCTTGTAACGACACTCAGCACTAGAACAACTGTGTTTGGTGCTACTAATCCTAAGGGGCATTATGATCCCGATCAACCTCTATCTGTCAACACAACACTCTCTGGTCCTTTATTAAGCAGGTTTGATATAGTCCTTGTGCTCTTGGATACAAAGAATCCTGAATGGGATGCAGTAGTTTCATCTCATATTCTTAAGGAGGCAGAACCAGATAGAATGAGGCAAGATGAAGATCTAGCAACTAACTGGCCTCTTTCTACGCTCAAGAGGTATATTCACTACGTCAAAGAAACCTTCAAACCAGTCCTTACAAGAGAGGCTGAGACAGTCATCTCCAGTTACTATCAACTGCAACGGAAATCGGGAACTCATAATGCAGCTAGGACAACTGTTCGCATGCTGGAAAGCTTGGTTCGCCTAGCTCAAGCCCATGCAAGGTTGATGTTCAGAAATGAGGTGACTCAATTAGATGCCATCACAGCAATTTTATGCATAGAATCTTCAATGACTACCTCTGCTATAGTGGATTGCATTGGTAATGCTCTGCATTCCAATTTTACCGAAAATCCTGACGAGGAATATACTAAACAGGAGAGGATGATACTAGAAAAATTGGGAATTGATGGATCCTGTGACATTAACATCATAGAAGACTGA	1881	0.4333	MASFLIRNHSDQLRCIASSPDFKLHYPLFVDFAELMDDDPHLAHLIFTEPATYLQIFDQAAVWAHKIILGDPGADKNWVEKKTIHVRINTSGSPLECPVIRSGAIKMHEGEREYMCLKCKKSFLVYPEVEARNSITLPSVCQVRGSKPCGGTKFQYVDSTIVCHDYQEIKIQESTQVLGVGVIPRSILVILQDDLVDIVKAGDDVIVTGVLTAKWSSEVKDVRCDLDPVLIANHVRRTNELKSEIDIPDDVVMKFKQFWIHFKECPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQRVHASGTKLRGEPHLLLVGDPGTGKSQFLKFAAKLSNRSVVTTGMGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILKEAEPDRMRQDEDLATNWPLSTLKRYIHYVKETFKPVLTREAETVISSYYQLQRKSGTHNAARTTVRMLESLVRLAQAHARLMFRNEVTQLDAITAILCIESSMTTSAIVDCIGNALHSNFTENPDEEYTKQERMILEKLGIDGSCDINIIED	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5875g00012	626	SMART	mcm	82	578	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Pral5875g00012	626	Gene3D	-	97	213	IPR012340	-
	Pral5875g00012	626	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	279	586	IPR027417	-
	Pral5875g00012	626	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	28	607	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Pral5875g00012	626	CDD	MCM9	272	576	-	-
	Pral5875g00012	626	FunFam	Probable DNA helicase MCM9	247	581	-	-
	Pral5875g00012	626	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	368	382	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pral5875g00012	626	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	446	454	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pral5875g00012	626	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	396	409	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pral5875g00012	626	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	310	325	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pral5875g00012	626	ProSiteProfiles	MCM family domain profile.	269	472	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pral5875g00012	626	SUPERFAMILY	Nucleic acid-binding proteins	25	220	IPR012340	-
	Pral5875g00012	626	Pfam	MCM P-loop domain	271	474	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pral5875g00012	626	Gene3D	-	263	582	IPR027417	-
	Pral5875g00012	626	SMART	AAA_5	311	460	IPR003593	GO:0016887
	Pral5875g00012	626	Pfam	MCM OB domain	99	212	IPR033762	-
	Pral5875g00012	626	Gene3D	-	108	164	-	-
	Pral5875g00012	626	Pfam	MCM AAA-lid domain	495	576	IPR041562	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5875g00012	Pral-Chr5875	68169	77009	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5875g00012	1	601	Core DNA Replication Machinery Family	AT2G14050	72.408	0.0	930

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5875g00012	K10738		-	gmx:100776255	1042.72