Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5873g00010 ATGCGTGAGGCATCATATATCAACCTAATGGATCAGTATCAGGCAGGGAGACCTCCTGAGAAGCTCCATCAGGGTGCCTCAATCACGCTGAGTACAAGGCCATATGTGTGTGCCATTGAGGATTGTCAGGCATGTTACAGAAGAAAGGACCACTTGACTCGTCATTCTCTTCAGCATCAAGGGAAAACTTTCAAGTGTCCTGTTGAGAATTGCAATCGCGACTTTGCTTTTCAAGGAAATATGACAAGACATGTCAAGGAATTCCATAATGAGAATTCCACTTCTACTACTGCTGAAAATTCGAAGCAGTATGTTTGCCCAGAAGTTGGTTGTGGAAAGGTTTTCAAATTTGCATCAAAGCTGAAAAAGCATGAAGATTCTCATGTTAAGCTGGAGTCAGTAGAGGTAATCTGCTTATATCCTGATTGTATGAAGCATTTCACAAATGAGCAATGCCTTCAAGAACATATCAAATTGTGCCACCAATACGTGACCTGTGAGACATGTGGGAAAAAACAGTTGAAGAAGAATATTAAGCGGCACCTCCGTATGCATGAAACCAGCACTTCGTCAGAGACGTTTAAATGTGAATATAAAGATTGTGGTAGCAAATTCTCAAGTAAATCTAATCTCCAGAAGCATGAGAAGGCTGTGCACTTTGAAGAGAAACCTTTTGTGTGTGGCTTTCCTGGTTGTGGCATGAGATTCTCTTACAAACATGTGAGAGATAAACACGAGAAAATTGGATCGCATGTCTATAGCCTGGGAGATTTTGAAGAAACTGATGGGCAGTTCAGATCAAGACCTAGAGGAGGGCGAAAGAGAACATGTCCTACTGTTGAAATGTTAGTTAGAAAAAGAGTTACTCCACCCAGTCAATTGCATCATTGGCTACTGACGCAAGAATATGATCAGATGCATTAA 924 0.4123 MREASYINLMDQYQAGRPPEKLHQGASITLSTRPYVCAIEDCQACYRRKDHLTRHSLQHQGKTFKCPVENCNRDFAFQGNMTRHVKEFHNENSTSTTAENSKQYVCPEVGCGKVFKFASKLKKHEDSHVKLESVEVICLYPDCMKHFTNEQCLQEHIKLCHQYVTCETCGKKQLKKNIKRHLRMHETSTSSETFKCEYKDCGSKFSSKSNLQKHEKAVHFEEKPFVCGFPGCGMRFSYKHVRDKHEKIGSHVYSLGDFEETDGQFRSRPRGGRKRTCPTVEMLVRKRVTPPSQLHHWLLTQEYDQMH 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5873g00010 307 ProSitePatterns Zinc finger C2H2 type domain signature. 227 251 IPR013087 -
Pral5873g00010 307 ProSitePatterns Zinc finger C2H2 type domain signature. 138 161 IPR013087 -
Pral5873g00010 307 ProSitePatterns Zinc finger C2H2 type domain signature. 196 219 IPR013087 -
Pral5873g00010 307 SMART c2h2final6 35 59 IPR013087 -
Pral5873g00010 307 SMART c2h2final6 194 219 IPR013087 -
Pral5873g00010 307 SMART c2h2final6 64 89 IPR013087 -
Pral5873g00010 307 SMART c2h2final6 225 251 IPR013087 -
Pral5873g00010 307 SMART c2h2final6 164 185 IPR013087 -
Pral5873g00010 307 SMART c2h2final6 136 161 IPR013087 -
Pral5873g00010 307 SMART c2h2final6 104 128 IPR013087 -
Pral5873g00010 307 Pfam Zinc finger, C2H2 type 64 89 IPR013087 -
Pral5873g00010 307 Pfam Zinc finger, C2H2 type 194 219 IPR013087 -
Pral5873g00010 307 Pfam Zinc finger, C2H2 type 104 128 IPR013087 -
Pral5873g00010 307 Gene3D Classic Zinc Finger 91 163 - -
Pral5873g00010 307 PANTHER ZINC FINGER PROTEIN 21 293 - -
Pral5873g00010 307 SUPERFAMILY beta-beta-alpha zinc fingers 101 130 IPR036236 -
Pral5873g00010 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 224 IPR013087 -
Pral5873g00010 307 Gene3D Classic Zinc Finger 167 221 - -
Pral5873g00010 307 ProSitePatterns Zinc finger C2H2 type domain signature. 66 89 IPR013087 -
Pral5873g00010 307 Gene3D Classic Zinc Finger 29 61 - -
Pral5873g00010 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 94 IPR013087 -
Pral5873g00010 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 133 IPR013087 -
Pral5873g00010 307 SUPERFAMILY beta-beta-alpha zinc fingers 62 90 IPR036236 -
Pral5873g00010 307 ProSitePatterns Zinc finger C2H2 type domain signature. 37 59 IPR013087 -
Pral5873g00010 307 Gene3D Classic Zinc Finger 222 248 - -
Pral5873g00010 307 SUPERFAMILY beta-beta-alpha zinc fingers 176 229 IPR036236 -
Pral5873g00010 307 SUPERFAMILY beta-beta-alpha zinc fingers 27 61 IPR036236 -
Pral5873g00010 307 Gene3D Classic Zinc Finger 62 90 - -
Pral5873g00010 307 ProSitePatterns Zinc finger C2H2 type domain signature. 106 128 IPR013087 -
Pral5873g00010 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 64 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5873g00010 Pral-Chr5873 161427 163565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5873g00010 33 254 C2H2 Transcription Factor Family AT1G72050 50.730 1.48e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5873g00010 zf-C2H2 0.0072 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5873g00010 K09191 - qsa:O6P43_001489 433.335