Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5873g00007 ATGGCTAAGGACGTTGAGGTTGCAGAGCGTGGGTCTTACTCCGCCAAGGACTACCATGACCCACCTCCGGCACCGCTCATTGACGGGGAGGAGCTTGGCAAGTGGTCCTTTTACAGGGCTTTGATTGCTGAGTTTATAGCCACCTTACTTTTCCTTTACATTACCGTCCTTACTGTGATTGGCTACAAGAGCCAGTCTGATACCACAGCTGGCGGTGATAAGTGTGGTGGCGTCGGCATTCTTGGCATTGCCTGGGCCTTCGGTGGCATGATCTTCATTCTTGTCTACTGCACCGCCGGGATCTCAGGAGGTCACATTAACCCTGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGTGTCACTGATTAGAGCCATCTTGTACATCGTGGCTCAGTGCTTGGGTGCTATCTGTGGAGTTGGGTTAGTGAAGGCCTTCCAAAAGAGTCTCTACACCAGGTACGGTGGTGGGGCCAATTCTCTGAGCGATGGCTACAGCATCGGCACTGGCTTGGGTGCTGAGATCATCGGAACCTTTGTTTTGGTATACACTGTGTTCTCTGCTACTGATCCCAAGAGGAACGCTAGAGACTCCCATGTGCCTGTTTTGGCTCCACTTCCCATTGGGTTTGCTGTGTTCATGGTTCATTTGGCCACCATCCCAGTCACCGGTACCGGCATCAACCCGGCCAGGAGTCTTGGAGCCGCTGTTATCTACGGCAAAGCCTGGGATGACCACTGGATCTTCTGGGTGGGACCATTCATTGGGGCAGCCATAGCAGCATTCTACCACCAGTTCATCTTAAGGGCAGGTGCAGCTAAGGCACTTGGATCATTCAGGAGCAACCCCTCTGTTTAA 858 0.5291 MAKDVEVAERGSYSAKDYHDPPPAPLIDGEELGKWSFYRALIAEFIATLLFLYITVLTVIGYKSQSDTTAGGDKCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYIVAQCLGAICGVGLVKAFQKSLYTRYGGGANSLSDGYSIGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYGKAWDDHWIFWVGPFIGAAIAAFYHQFILRAGAAKALGSFRSNPSV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5873g00007 285 FunFam Probable aquaporin PIP1-2 24 283 - -
Pral5873g00007 285 NCBIfam MIP family channel protein 43 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5873g00007 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Pral5873g00007 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Pral5873g00007 285 Pfam Major intrinsic protein 32 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5873g00007 285 CDD MIP 39 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5873g00007 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5873g00007 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5873g00007 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5873g00007 285 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5873g00007 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5873g00007 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5873g00007 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 279 IPR034294 -
Pral5873g00007 285 SUPERFAMILY Aquaporin-like 33 269 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5873g00007 Pral-Chr5873 140146 143219 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5873g00007 1 285 Major Intrinsic Protein MIP AT3G53420 84.669 1.17e-177 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5873g00007 K09872 - qsa:O6P43_008626 520.39