Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5872g00003 ATGGCTTCCAACACATTGATGAGCTATGGCATTGCCACTGCCTCCTCATTCCCTTCCGTGCTTTCTTCATCTAAATCCAAATTCGCCGCCGCAATCCCACTCCCCGGCGGTGCCTCCGTCGCCTCCTCTTCTCGCTTCACCATGACCGCCGACTGGATGCCCGGCCAGCCCCGACCTCCTTACCTCGACGGTTCAGCCCCTGGTGACTTCGGATTTGACCCTCTTCGTCTAGGGGAAGTGCCGGAGAACCTCGAGAGATACAAAGAATCTGAGCTCATCCACTGCAGATGGGCTATGCTTGCCGTGCCAGGGATCTTGGTACCAGAAGCAATGGGATTAGGGAACTGGGTAGAAGCTCAGAGATGGGCAGCAGTTCCAGGAGGTCAAGCGACTTACTTGGGGAACCCAGTTCCATGGGGTACCCTGCCAACCATTTTGGTGATTGAATTCCTAGCCATAGCCTTTGTGGAGCACCAACGCAGCATGGAGAAAGACCCCGAGAAGAAGAAGTACCCTGGTGGTGCTTTTGACCCTCTTGGCTACTCTAAAGACCCTGCCAAGTTCCAAGAATACAAAGTCAAAGAAATAAAAAATGGGCGCTTGGCTTTGTTGGCATTTGTGGGGATATGTGTGCAGCAATCAGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCGACTCACTTGGCTGATCCATGGCACAACAACATTGGGGATGTCATCATTCCCAGAGCTCTTTCGCCCTGA 747 0.5328 MASNTLMSYGIATASSFPSVLSSSKSKFAAAIPLPGGASVASSSRFTMTADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAMGLGNWVEAQRWAAVPGGQATYLGNPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPAKFQEYKVKEIKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRALSP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5872g00003 248 Gene3D Chlorophyll a/b binding protein domain 53 239 - -
Pral5872g00003 248 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 43 239 IPR001344 GO:0009765|GO:0016020
Pral5872g00003 248 Pfam Chlorophyll A-B binding protein 59 213 IPR022796 -
Pral5872g00003 248 SUPERFAMILY Chlorophyll a-b binding protein 43 242 - -
Pral5872g00003 248 FunFam Chlorophyll a-b binding protein, chloroplastic 53 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5872g00003 Pral-Chr5872 33148 34801 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5872g00003 1 200 Chloroplast and Mitochondria Gene Families AT3G54890 80.597 3.89e-108 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5872g00003 K08907 - cave:132164026 450.669