Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5870g00012 ATGTCTGGAAGCACAAGTTGCACTGTTTACATAGGCAATCTAGATGAGAGAGTCTCGGAGAGGATCTTATATGATATATTAATTCAAGCAGGACGAGTGGTGGAACTGCATATTCCTAAAGATAAGGAATCCGAGAAACCTAAAGGATTTGCCTTTGCAGAATATGAAAGTGAGGAGATTGCAGATTATGCTGTCAAGCTTTTCTCGGGCCTTGTGACACTCTACAACAGAACGCTGAAGTTTGCGATATCTGGCCAAGACAAACCTACTCTAAATGGTTCTGCAGTGGCTACACCATCATCAAATTCTTCCCACCGATCGAGGCCCCAGCCTGTGCCAATAAATAATACTGATATTTCTCCGCACTCTGCTAGGTTACCAACACCTAGCCGGATTTCTGATTACCCTGCAAATTATTCCCGAGTTAATCACCGGGTAGTTGACCAATCTAGTGAGTATGGATCTCTCTACAATGGCAACGATTATGAATTCAGCCGGAGAGTCTTTGGGTCAACATTGGATAACATTAGCCGGTATAGGTCACGCCGACATGATACAAGTAACCCAATCTCTTACCCATCTTACTAA 588 0.4337 MSGSTSCTVYIGNLDERVSERILYDILIQAGRVVELHIPKDKESEKPKGFAFAEYESEEIADYAVKLFSGLVTLYNRTLKFAISGQDKPTLNGSAVATPSSNSSHRSRPQPVPINNTDISPHSARLPTPSRISDYPANYSRVNHRVVDQSSEYGSLYNGNDYEFSRRVFGSTLDNISRYRSRRHDTSNPISYPSY 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5870g00012 195 Gene3D - 2 92 IPR012677 -
Pral5870g00012 195 SMART rrm1_1 8 82 IPR000504 GO:0003723
Pral5870g00012 195 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Pral5870g00012 195 SUPERFAMILY RNA-binding domain, RBD 4 83 IPR035979 GO:0003676
Pral5870g00012 195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Pral5870g00012 195 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 192 - -
Pral5870g00012 195 MobiDBLite consensus disorder prediction 91 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5870g00012 Pral-Chr5870 82135 87681 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5870g00012 4 72 Eukaryotic Initiation Factors Gene Family AT4G34110 30.435 5.64e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5870g00012 K12831 - gmx:100803118 290.426