Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral586g00001 ATGGTGAAGACAATCACACCCTCACCCATCCTCGTCTTCTTGCTTCTCTCCTCCACCGTCGATGCTCAGTCAAGTTCTGGACCGGTGGTTTCTCCAAATGCCCCACTTCACACTTGGGATGTATCATTCGCTCCCGTGATTGTGGCCCTTGTTTGCGCCACCTTCTTCATTGTCAGCTTTGCCCTCTACCTCCGCCACTGCTCCGACGTGGATCTGGCTGCTGCCGACAATTGTTCTTCAAGTGGTCCTCAAGGTATTGACCCAAAATTACTCGACACCTTCCCCATCCTCGTGTATTCCGCCGTGAAAAACCTCAAATTTGGGAAAGCCGCCGCGCTGGAGTGTGCCGTGTGCTTGAGTGAGTTCGACCAACACGATACGCTCCGATTACTTCCGAAATGTAACCATGTGTTTCACCCTCAATGCATCGACGCCTGGTTGGCCTCCCACGTGACTTGCCCTGTTTGCCGTTCAAGACTGAAGCCGGCGGAGGAGCACCGGCGAGGGGAAAACGATGTTGCGATCGAAATTCCGAATGAGGTTATAAATGCACGACAGGTGTTCGATGAAAGTTCTGGGAGTAGAACAGAGCTTCATTCAGGAGATAGAAGAGGTATGGGGAGGCAAGGACACGGAGAGGTACAATCTCAGATTGTTGGAGGATCTGAGGAAACAGATTACTGTGAGTCACGGAGGATTGCGACGGTCGGCGAGCTGCAATGTGTTCCGTAG 732 0.5246 MVKTITPSPILVFLLLSSTVDAQSSSGPVVSPNAPLHTWDVSFAPVIVALVCATFFIVSFALYLRHCSDVDLAAADNCSSSGPQGIDPKLLDTFPILVYSAVKNLKFGKAAALECAVCLSEFDQHDTLRLLPKCNHVFHPQCIDAWLASHVTCPVCRSRLKPAEEHRRGENDVAIEIPNEVINARQVFDESSGSRTELHSGDRRGMGRQGHGEVQSQIVGGSEETDYCESRRIATVGELQCVP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral586g00001 243 SMART ring_2 115 156 IPR001841 -
Pral586g00001 243 CDD RING-H2_EL5-like 114 157 - -
Pral586g00001 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 166 IPR013083 -
Pral586g00001 243 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Pral586g00001 243 MobiDBLite consensus disorder prediction 190 221 - -
Pral586g00001 243 PANTHER RING FINGER DOMAIN-CONTAINING 37 164 - -
Pral586g00001 243 MobiDBLite consensus disorder prediction 195 209 - -
Pral586g00001 243 Pfam Ring finger domain 114 157 IPR001841 -
Pral586g00001 243 SUPERFAMILY RING/U-box 114 163 - -
Pral586g00001 243 FunFam E3 ubiquitin-protein ligase ATL6 74 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral586g00001 Pral-Chr586 20398 21287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral586g00001 11 171 Rapid Response to Elicitors AT3G05200 45.977 2.41e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral586g00001 K10664 - pcin:129287042 191.43