Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5867g00005 ATGGAGCTTCCTGAGCCTGTTTCGTTTATGTGCCCAGCTTTTCATGTGACACAGATTATGAGCGAACCGTCAAGAAAGCTGACTCGGCATTCACCATTTCAGTCATGGCGGAGAAACCTCTTCATATTTGAAGAGAGGACAGTTACCAATGAAGCTATTATCGCTAACTCCATTGCCCTTTTAGATAACCTACGTCAGGCTCGGTGTAAATTCTCAGGTACTTCTATACCAGGAGCATCTTCGCATGGTGAAAAGCATGGTTGGCGACCTCCACCCCAGTGTTGGACAAAGTTGAATGTTGATGGGGCTTTCTCTACTTTCGGAGCTATTAGTGCATGCGGTGGTCTACTTAGAGATGCTACTGGTCTTTATATTCGTGGGTTTCTACATAGACTTGATGATGGAGATGCCCTTCACGCGGAGTTATGGGCATGTTTGCATGGACTTAAACTTGCGTGGGATGGAGGTCATCGTCAAGTTATTCTAGAATCAGACTCCAGTAGTGTTTTGGAACTAATTTCGACTCACCCAGATGAACATCATGATGATTTTCGTCTGCTTAAAGAGATCAGAGAGATGCTGGATCGGGACTGGGAAGTTCAACTTCAGCATGTGAGCAGGATGCATAATAGAGCCGCTGATTTCCTCGCGAAGGAGGGTTTAAAGGCTATTTCTGGTTTTCATTTGGTTGTCCCTGCACCTGTTAACTTGTTGCCTATTTTGGATTCTGATTGTAATAACACTTGCAATCGTAGGGGGCTGATTACTGACCCTGAGCTCATAGATGAAATCGTCAAGGATGTTTTGGTAAGAGTGAATGATATCTATCCTTGTGAGTCAAATTGCCTTGTTGGAATTGATCAACATGTTGATCGTATTAGATCATTTTTGGAAATGGAGTCAAAAGGAGTTCAAATCCTCAAAATTTGGGGCATGAGTGGTATCGGTAAAACAGCCATTGCACGAGTTGCGTTTGAGAAATTCTCTTCCCGCTATGAAGGCTCTTACCTTGTAGACAATGTGAGAGAAGAATCACAAAAGCATGCGCTGAAATCTTTAAGAGAGAAACTTATTTCTGAACTGCAAGAGGAAAAATCCACTTTCATCCATAGAAAGCTTGTTAGCCGAAGAAAAGTTTTAGTTGTACTTGATGATGTGGGTGCTCCAGAACAACTACGGCATCTAGTTACAGAAGGATTTCACCGGGGACTTGGTAGTAGAGTTATTGCAACAAGCCAAAACAAGCGAGCACTAATTGCTGGAGGAGTTCATCCCAATGACATACTTGAGGTCAAGAAATTGGACTTTGAAGAATCCCTTAATCTTTTCAGCTTAAATGCCTTCAACAATAGCCATCCCGAAAGGGGATATGAAGAACTTTCAAAACAAGCAGCTGCTTATGCCAATGGCCTTCCTCTAGCTCTGAAAGTTTTGGGTTTACATCTTTGTTCTTGTGATAGAGAAACATGGAAAAGTACATTGGGAAAACTCGAGATGTATCCCCATCCTCAAATTCAAGATGTGCTGAAAATGAGTTTTGAGGGATTAGATGATGTAGAAAGGGACATATTTCTTGATATCACTTTCTTTTGCAAAGGAGAAGATAAAGATCATGTCAAGAGGCAACTCGATGCCAATAACCTTTTTGCTACTTATGGAATAAAAGGACTTCCAGATAAAGCTCTTATATCCATTTCAAACAACAATGTAATAAAAATGCATGACTTGATTCAAGAAATGGGTTGGGAAATAGTTCGACAAGAATGCAAGGACAATCCTAGGGGACGTAGTTGGTTGAATGACTTTGAGGAAGTAGGAATTGGTGCACTTTCTGGAGAAGAAACTCGTTGCTCCGTCTTGAATCTCTTCCTCTCCAACCATAGCTTCTTTTTCTACTTCTTTCGATGA 1908 0.4146 MELPEPVSFMCPAFHVTQIMSEPSRKLTRHSPFQSWRRNLFIFEERTVTNEAIIANSIALLDNLRQARCKFSGTSIPGASSHGEKHGWRPPPQCWTKLNVDGAFSTFGAISACGGLLRDATGLYIRGFLHRLDDGDALHAELWACLHGLKLAWDGGHRQVILESDSSSVLELISTHPDEHHDDFRLLKEIREMLDRDWEVQLQHVSRMHNRAADFLAKEGLKAISGFHLVVPAPVNLLPILDSDCNNTCNRRGLITDPELIDEIVKDVLVRVNDIYPCESNCLVGIDQHVDRIRSFLEMESKGVQILKIWGMSGIGKTAIARVAFEKFSSRYEGSYLVDNVREESQKHALKSLREKLISELQEEKSTFIHRKLVSRRKVLVVLDDVGAPEQLRHLVTEGFHRGLGSRVIATSQNKRALIAGGVHPNDILEVKKLDFEESLNLFSLNAFNNSHPERGYEELSKQAAAYANGLPLALKVLGLHLCSCDRETWKSTLGKLEMYPHPQIQDVLKMSFEGLDDVERDIFLDITFFCKGEDKDHVKRQLDANNLFATYGIKGLPDKALISISNNNVIKMHDLIQEMGWEIVRQECKDNPRGRSWLNDFEEVGIGALSGEETRCSVLNLFLSNHSFFFYFFR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5867g00005 635 CDD RNase_H_like 98 218 IPR044730 -
Pral5867g00005 635 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 217 605 IPR044974 GO:0006952
Pral5867g00005 635 Gene3D - 267 420 IPR027417 -
Pral5867g00005 635 SUPERFAMILY "Winged helix" DNA-binding domain 504 589 IPR036390 -
Pral5867g00005 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 527 IPR027417 -
Pral5867g00005 635 Gene3D - 95 222 IPR036397 GO:0003676
Pral5867g00005 635 Gene3D - 433 517 IPR042197 -
Pral5867g00005 635 Pfam NB-ARC domain 287 498 IPR002182 GO:0043531
Pral5867g00005 635 Pfam Reverse transcriptase-like 99 219 IPR002156 GO:0003676|GO:0004523
Pral5867g00005 635 PRINTS Disease resistance protein signature 306 321 - -
Pral5867g00005 635 PRINTS Disease resistance protein signature 373 387 - -
Pral5867g00005 635 PRINTS Disease resistance protein signature 468 482 - -
Pral5867g00005 635 ProSiteProfiles RNase H type-1 domain profile. 92 222 IPR002156 GO:0003676|GO:0004523
Pral5867g00005 635 SUPERFAMILY Ribonuclease H-like 95 225 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5867g00005 Pral-Chr5867 89705 108876 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5867g00005 256 612 WRKY Transcription Factor Family AT4G12020 34.133 2.34e-47 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5867g00005 - - pcin:129311144 318.931