Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5867g00002 ATGGAACAGTCGAAATTGTCTGCTGAATCTCCTTACAAGGAGATATCAGCCAGATGGGATCCAGATGAAGCATGCTTGCCTGTAATTGATGAAGCACCTGTCTTTCATCCAACTGCTGAGGAGTTTGAGGACACCCTTGGTTACATAGCAAAGATACGCCCCCTGGCTGAACCACATGGCATATGTCGGATAGTCCCTCCACCTTGCTGGACTCCATCTTGCCCTCTTAAGGAGAAAGATATTTGGGAAAATGCTAAATTTCCCACCCGTATTCAGCAGATTGACTTGCTTCAGAATAGAGAGCCCATGAGAAAGAAAAGCAGGGGAAGGAAACGAAAACGTAGAAAGAACACAAAAATGGCAATGTGCAGGAGACTTGCCAATCCAGATTCAGAAGTTAATGCTGCTTCTGAATCTGATGAAAAATTTGGATTCCAATCAGGACCAGACTTCACACTCAGAGACTTTCAACGATATGCTGCTTTTTTTAAAGAACGCTACTTTGGGAAGAAGGATATCAAAGAGGATGGACAAATTAGTGATAATAAATATCAGAAAAGGTGGCAGCCCTCTGTGAAGGAAATTGAAGGTGAATACTGGAGAATAATTGAGCAACCAACTGATGAGGTCGAGGTGTACTACGGAGCTGACCTGGAAAGTGGAGCACTTGGAAGTGGTTTTCCAAAGGCTGATTCTCTAACTAAGAGTGACTTGGATGAGTATACACTATCTGGCTGGAATCTGAATAACATCCCACGGCTGCCAGGTTCGGTGCTATGTTTTGAAGGAAGTGATATCTCTGGAGTTCTAGTGCCTTGGCTATATGTTGGGATGTGTTTTTCATCATTTTGCTGGCATGTCGAGGATCATCACCTTTATTCACTAAATTATTTGCACTGGGGCGATCCAAAAGTATGGTATGGAGTACCTGGCAATCATGCTACGTCTTTGGAGGGTGCGATGAGAAAGCATATGCCTGATTTATTTGAGGAGCAACCTAATTTACTCAATGAACTGGTCACTCAACTATCACCTTCAATTCTTAAATCTGAAGGAGTTCCTATATTTCGCACTGTCCAGCATTCTGGGGAATTTGTAATTACCTTTCCTAGAGCATACCATGCTGGCTTCAATTGTGGTTTCAACTGTGCCGAGGCTGTGAATGTTGCTCCTGTAGATTGGTTGCTGCATGGCCAGAATGCTGTTGAACTTTATAGTCAGCAGTGCCGTAAAACATCATTGTCACATGACAAGCTATTACTAGGATCAGCTCAGGAAGCCATACAAGCCCTTGCAGAAGTTCTTCTTGAAGGAAAGGAAACTCAAAAAAATTTGAAATGGAAAAGTGTCTGTGGGAAAGATGGTGTTCTTACTAATGCTGTTAAGACAAGGATAAAGATTGAGGAAGAGCGGATACAACGTCTGCAGACTCCCATAAAATTGGTGAAAATGGACATCAACTTTGATTTGGATAAGGAAAGAGAATGCTTTGCTTGCTTCTATGATTTGCACCTTTCTGCTTCAGGCTGCCAATGCTCTGTTGATAAATACTCTTGTCTAAGACACTCAAATTCGTTTTGCTCATGTGGATATGATGAAAGATTTGTTCTATTTCGTTATCCTATAGAGGAGCTAAAAGAGTTGGTTAGAGCATTAGAAGGAGGGTTAGAAGCTATCAAGTCATGGCTAATGAAGCTAAGGTTCGGTTGCTCAGAGTCACAAAAGGAACAAGATGATGTGGTCCTTGATAGTGAAGAAAATGTATCAGACAGAGTGCTACCTAACAGTGAATGTAAAACGGAAGCAGTAGACATGGACAGTTTCAATAAAAGCACATCTTTGACAAGCGAGAGCTTTCTAATTCAGAAGTTTGCTGCATCTGTTGAGCCTGTAAGCCTGGGCTCCATTGTGCTTGGAAAGCTGTGGTGCAGTAAGCACAAGATATATCCAAAAGGATTCAAGAGTCGTGTCAAGTTCTTTAGCATGCTTAATCCATCAACAATCTGTAGCTATGTTTCCGAAGTTCTTGATGGTGGCTTAATTGGACCTCTTTTCAAGGTTAGCATGGAAGAACATCCAAGTGAAAGTTTCATGAACATGTCAGCAGAGAAGTGCTGGGAATCAGTTCTGGAGAGAGTAAATCGTGAGATCATCAGGCGCAGAAGCCTAGGGGAACTAGAACTTCCTCCATTGGAGCTTCTGCAAGGCATAAACGGTCTACAAATGTTCGGATTCCTTTCTCCATCGATCATCCAGGGTATTGAAGCTCTGGATCCCAGTCATCAATGCGGAGAATACTGGAACCGCAAGGAATTAATCTCTTCTGTATCTTCCAGCAGTACAAGTGATGATGTCAAGCTTGTGCGTGGCAGTTCGAGTAGCCTGTCTGATGAAAATGATGATAAACTTATAGGAGAAAAATGTGACTCGTTCGAAGGGACGATACTGGTGCTCAAAGGATTGTTGAAGAAAGCGAACCTGGATGAGTTAATCACAATGCAGAAGTTACTGGGGTCTAATGCAGAAAGTACTCAGTGGAGAGTGGAAATTGCGGCTCTGATAGAGGAGATCCAGAAAAGCTTGTAG 2586 0.425 MEQSKLSAESPYKEISARWDPDEACLPVIDEAPVFHPTAEEFEDTLGYIAKIRPLAEPHGICRIVPPPCWTPSCPLKEKDIWENAKFPTRIQQIDLLQNREPMRKKSRGRKRKRRKNTKMAMCRRLANPDSEVNAASESDEKFGFQSGPDFTLRDFQRYAAFFKERYFGKKDIKEDGQISDNKYQKRWQPSVKEIEGEYWRIIEQPTDEVEVYYGADLESGALGSGFPKADSLTKSDLDEYTLSGWNLNNIPRLPGSVLCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGNHATSLEGAMRKHMPDLFEEQPNLLNELVTQLSPSILKSEGVPIFRTVQHSGEFVITFPRAYHAGFNCGFNCAEAVNVAPVDWLLHGQNAVELYSQQCRKTSLSHDKLLLGSAQEAIQALAEVLLEGKETQKNLKWKSVCGKDGVLTNAVKTRIKIEEERIQRLQTPIKLVKMDINFDLDKERECFACFYDLHLSASGCQCSVDKYSCLRHSNSFCSCGYDERFVLFRYPIEELKELVRALEGGLEAIKSWLMKLRFGCSESQKEQDDVVLDSEENVSDRVLPNSECKTEAVDMDSFNKSTSLTSESFLIQKFAASVEPVSLGSIVLGKLWCSKHKIYPKGFKSRVKFFSMLNPSTICSYVSEVLDGGLIGPLFKVSMEEHPSESFMNMSAEKCWESVLERVNREIIRRRSLGELELPPLELLQGINGLQMFGFLSPSIIQGIEALDPSHQCGEYWNRKELISSVSSSSTSDDVKLVRGSSSSLSDENDDKLIGEKCDSFEGTILVLKGLLKKANLDELITMQKLLGSNAESTQWRVEIAALIEEIQKSL 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5867g00002 861 FunFam Putative lysine-specific demethylase JMJ16 626 764 - -
Pral5867g00002 861 Pfam F/Y-rich N-terminus 631 675 IPR003888 GO:0005634
Pral5867g00002 861 Gene3D Cupin 17 390 - -
Pral5867g00002 861 SMART cupin_9 240 406 IPR003347 -
Pral5867g00002 861 PANTHER LYSINE-SPECIFIC DEMETHYLASE 27 616 - -
Pral5867g00002 861 SMART JmjN_1 31 72 IPR003349 -
Pral5867g00002 861 ProSiteProfiles FYR domain FYRC motif profile. 680 770 IPR003889 GO:0005634
Pral5867g00002 861 MobiDBLite consensus disorder prediction 98 119 - -
Pral5867g00002 861 Pfam C5HC2 zinc finger 496 548 IPR004198 -
Pral5867g00002 861 SUPERFAMILY Clavaminate synthase-like 237 428 - -
Pral5867g00002 861 MobiDBLite consensus disorder prediction 104 119 - -
Pral5867g00002 861 Gene3D - 626 764 - -
Pral5867g00002 861 SMART fyrc_3 684 772 IPR003889 GO:0005634
Pral5867g00002 861 Pfam F/Y rich C-terminus 682 769 IPR003889 GO:0005634
Pral5867g00002 861 ProSiteProfiles JmjC domain profile. 240 406 IPR003347 -
Pral5867g00002 861 ProSiteProfiles FYR domain FYRN motif profile. 620 678 IPR003888 GO:0005634
Pral5867g00002 861 SMART fyrn_3 634 678 IPR003888 GO:0005634
Pral5867g00002 861 ProSiteProfiles JmjN domain profile. 32 73 IPR003349 -
Pral5867g00002 861 Pfam JmjC domain, hydroxylase 273 389 IPR003347 -
Pral5867g00002 861 Pfam jmjN domain 33 66 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5867g00002 Pral-Chr5867 45621 53558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5867g00002 12 796 JUMONJI Transcription Factor Family AT1G30810 58.660 0.0 907
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pral5867g00002 JmjC 5.6e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5867g00002 K11446 - sind:105175826 981.089