Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5865g00004 ATGGAGTCTCATCGTGTTGAAGATATTAGCATATACGAGTGCAGACTTCATAAATGGGACCCAGCTATCCAATGCGATTTTCTTGATGGGCATCCAGAATCTCCTCCCCCAGAAGAGGAATACTTCCAGTTCAGAGTCGTTTTAAAAGAACGCTATTACAATATTTCAAACATGCATCATGACAGAACAGCAGATACAAATACTACTGAGTACGACTTTTTCAGCATCCCATACGCGTCAAGGAAGGAAGCAACGGATTATATGATTTCTATTCTTAATATTCCGGAAGCAAATCGCAAATCCATGGCGCAGCAAATTCTGGATTATATGGACTTCGTGCCTGATCTTGACAATTCATACAACTTGTTCGTTATGATGCTGGTGAATGTTGATATTTTTTATCACGACTGTGATAAAGCTATAGAAAGAGGTGCCAAGGAGGACCAAGGTTGCAGATTGAAAGGAGTGAAGATTCAAGAGGAAGAGGTTGGTGAATGTGGAATCTGTTGGGAAAATTTTAGAATTGACACGGTTCAAATGCCTTGTTCCCATTTGTTTCATGGGAACTGCATTTTAAGTTGGCTTTTGAGGAAGAATAATTGTCCCATGTGTCGCTTTCAAATGCCTTCAATAGGGACGGATTCCTAG 648 0.4028 MESHRVEDISIYECRLHKWDPAIQCDFLDGHPESPPPEEEYFQFRVVLKERYYNISNMHHDRTADTNTTEYDFFSIPYASRKEATDYMISILNIPEANRKSMAQQILDYMDFVPDLDNSYNLFVMMLVNVDIFYHDCDKAIERGAKEDQGCRLKGVKIQEEEVGECGICWENFRIDTVQMPCSHLFHGNCILSWLLRKNNCPMCRFQMPSIGTDS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5865g00004 215 ProSiteProfiles Zinc finger RING-type profile. 166 205 IPR001841 -
Pral5865g00004 215 SMART ring_2 166 204 IPR001841 -
Pral5865g00004 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 214 IPR013083 -
Pral5865g00004 215 Pfam Ring finger domain 165 205 IPR001841 -
Pral5865g00004 215 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 100 209 - -
Pral5865g00004 215 SUPERFAMILY RING/U-box 165 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5865g00004 Pral-Chr5865 23274 23921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5865g00004 153 210 C3H Transcription Factor Family AT5G01980 46.032 3.71e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5865g00004 - K11982 pcin:129316560 82.4185