Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5865g00002 ATGGGTGCTCCTAAGCAGAAGTGGACACAAGAAGAAGAAGCAGCACTAAAAGCTGGAGTTGTTAAGCATGGGGTTGGAAAATGGCGGACGATACTTAAGGATCCAGAGTTTAGTAGTGTCTTGTATCTGCGGTCTAATGTAGATCTTAAGGATAAATGGAGAAATCTGAGCGTAATGGCAAATGGATGGAGTTCCCGGGACAAGTCTAGATTAGCTGTTAGAAGGGCACATCAGGTCCCAAAACAAGATGAAAATGTGATGACTGCCCCTTCTGTTGCAAGTGATGAAGAACTTATGGATGCCAGGGCTCCTCAAGTTCCTAGAGATATGCTGCAGATTCCTGGTCCAAAGAGGTCTATTGTAAGATTGGATAACCTTATAATGGAAGCAATAGCTAGCTTGAGGGAGCCTGGTGGTTCCAACAAGACAAATATTGCAGCTTACATAGAGGACCAATATGGGGCACCTCCTGATTTCAGAAGGTTGTTGTCGACAAAATTGAAATCATTGACTGCAAGTGGAAAACTGATCAAGGTGAAGCGAAAATATAGGATTGCCCCTATGCCATCATACCCAGACCGAAGAAGAAACTCATCCGTGTTATTATCAGACGCCAGGCAGAGAATCTCTATGAAGATAGACAAGGATGAGGCCAATGTCATCACAAAGTCTCAGATAGATTCAGAACTAGCAAAGATAAGGTCAATGACAGCGCAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCGGCCATAGCAGAAGCTGAAGAAGCAGCAAAAGAGGCAGAGGCTGCTGAAGCTGATGCAGAGGCAGCTCAAGCTTTTGCAGATGCTGCAATGAAGACACTTAATGGAAGAAACACCCCAAAATTGAGGCAGTCCGTAGAGCTGATGCGAGCCTGA 915 0.4546 MGAPKQKWTQEEEAALKAGVVKHGVGKWRTILKDPEFSSVLYLRSNVDLKDKWRNLSVMANGWSSRDKSRLAVRRAHQVPKQDENVMTAPSVASDEELMDARAPQVPRDMLQIPGPKRSIVRLDNLIMEAIASLREPGGSNKTNIAAYIEDQYGAPPDFRRLLSTKLKSLTASGKLIKVKRKYRIAPMPSYPDRRRNSSVLLSDARQRISMKIDKDEANVITKSQIDSELAKIRSMTAQEAAAVAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADAAMKTLNGRNTPKLRQSVELMRA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5865g00002 304 Gene3D - 8 90 - -
Pral5865g00002 304 FunFam Telomere repeat-binding factor 1 2 58 - -
Pral5865g00002 304 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Pral5865g00002 304 Coils Coil 242 279 - -
Pral5865g00002 304 Gene3D - 117 195 IPR036388 -
Pral5865g00002 304 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral5865g00002 304 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral5865g00002 304 SMART sant 4 59 IPR001005 -
Pral5865g00002 304 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Pral5865g00002 304 Pfam linker histone H1 and H5 family 124 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral5865g00002 304 FunFam Telomere repeat-binding factor 1 117 197 - -
Pral5865g00002 304 SUPERFAMILY "Winged helix" DNA-binding domain 116 195 IPR036390 -
Pral5865g00002 304 PANTHER SINGLE MYB HISTONE 4 1 291 IPR044597 GO:0003691
Pral5865g00002 304 FunFam Telomere repeat-binding factor 1 8 86 - -
Pral5865g00002 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Pral5865g00002 304 CDD SANT_TRF 6 56 - -
Pral5865g00002 304 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5865g00002 Pral-Chr5865 4221 31827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5865g00002 1 295 Single Myb Histone (SMH) Gene Family AT1G49950 66.667 1.24e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pral5865g00002 Linker_histone 4.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5865g00002 K09422 - gmx:778173 364.385