Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5862g00009 ATGGCTTCCTCTTCTTCTTCCTCAGCTGCTAATTCTCATCATCAAAGGGTTATGGAAAAGCCAAACCAAGAACTTCTTCAACAGCAACAAGAAGCTCTCAAGTGTCCTCGATGTGACTCATCAAACACCAAGTTCTGTTACTATAACAATTACAGCTTGTCTCAGCCTAGACATTTCTGTAAAGCCTGCAAGCGATACTGGACTCGAGGAGGTACCTTAAGGAATGTTCCTGTTGGTGGAGGTTGCAGAAAAAACAAGCGTGTGAAGCGTCCTTCTTGTTCTTCTTCAGCTTCAGAAACTCATCATAATATTAATATTACTACACCTTCTTCTAATTCTTCTTCTTCTTCTTCTTCTACTGTTGCTGGTGTCTCAGCTGTTTCAAACCCTCCTTCACAGTCTCGTCAGATCGATGTGGGTGCTTCCACCTCCAATCACATCAGTCCTTTATTTTATGGCATGAATCTTCCGTTTCCAAGGTTCAATTCCAGTTCTGGGTTTGATCATCTTCATCTTCATCAACCTCAGATTAATCACCATTCTCTTGGATTAGATTTCTCAGATAATGGTTACCGAAATGGGTTTTCTTCAAATCATACACTTCTTTCAAGTTATACCTCTTCCATCTTTGCTAATTCTTCTTCAACATCCATAACCACATCCAGTACTGCTCCCCCTCCTTCTATTATGGCTTCACTGTTAAGCTCCTCGAATCTGCAGCAACAAAAGTTCATCAATAGTGGGGCTGATAACAGTACTTTTCAGGGGTTCGGACGATTAGAAGAACTGGCAATAGCAGGCAATAATGATAATAATAGCACAAATACAGCTTTAAAAGAAGTGAAATCTGTGGTGGAAGATGAAAACAGGTTTCTGGGGTGGCAAAATAACCAGATCGATCATCAAGCAGGCTTGTCTGATCCTTCATCACTTTACTGGAACGCTGCAACAGCTTTGGGTTCTACTTGGAATGATCAAACCAATATTGGTCCTCAGTCACTTCTCTCATCTGATCTACAATAA 1023 0.4086 MASSSSSSAANSHHQRVMEKPNQELLQQQQEALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPSCSSSASETHHNINITTPSSNSSSSSSSTVAGVSAVSNPPSQSRQIDVGASTSNHISPLFYGMNLPFPRFNSSSGFDHLHLHQPQINHHSLGLDFSDNGYRNGFSSNHTLLSSYTSSIFANSSSTSITTSSTAPPPSIMASLLSSSNLQQQKFINSGADNSTFQGFGRLEELAIAGNNDNNSTNTALKEVKSVVEDENRFLGWQNNQIDHQAGLSDPSSLYWNAATALGSTWNDQTNIGPQSLLSSDLQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5862g00009 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 244 IPR045174 GO:0003700|GO:0006355
Pral5862g00009 340 MobiDBLite consensus disorder prediction 91 139 - -
Pral5862g00009 340 Pfam Dof domain, zinc finger 31 87 IPR003851 GO:0003677|GO:0006355
Pral5862g00009 340 ProSitePatterns Zinc finger Dof-type signature. 35 71 IPR003851 GO:0003677|GO:0006355
Pral5862g00009 340 ProSiteProfiles Zinc finger Dof-type profile. 33 87 IPR003851 GO:0003677|GO:0006355
Pral5862g00009 340 MobiDBLite consensus disorder prediction 77 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5862g00009 Pral-Chr5862 110235 112612 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5862g00009 33 328 C2C2-Dof Transcription Factor Family AT1G28310 36.923 1.07e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral5862g00009 zf-Dof 1.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5862g00009 - - pcin:129285070 396.741