Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5862g00008 ATGATGAATATTCCAGAACGTGGCGGTGGTGGTGGTGACGGTGGAGGTGGAGGAGGAGGAGAGGTGAATAACCAACCTCAGCTTCAACCGCCGCCTCAGCCTCCGCCACAGCAGAGATGTCCCCGCTGTGATTCTGTGAACACCAAGTTCTGCTATTACAACAACTACAGCCTGTCGCAGCCAAGGTACTTCTGCAAAACTTGTAAAAGGTACTGGACCCATGGAGGATCCTTGCGAAACATACCCATCGGTGGTGGTTGCCGGAAGGGAAAACGGACCAAATCGTCGTCGGCCTCTTCGTCATCATCCGCTGCCGCCCTTCAATTGATGAGCCGGCAACAACCGCTGCAACCTCGGCTGCAAGAGGTGATCCCTACGCAACCGAACCCGATGACGTTACCTTCACGCGTTAATCTGGTCGGTCGTTCTTCTGCGATGGCGGCACAGGCACCGGCACCGGCGGTTCCTTCGATCAGTTCCTACTATCAAGGTGGCGGGCATCTATCATCTCTGGCGGCGATTCACTCCCAAAACCCATCACAACCATTATTCAACCTTTCGTCTCTGAATCTTGTTCCTGCCAATCTGGGTCTTCATCCTTGGTTCAACGCTCCGTCGACTCAAGCCTCAAAGCACCAAGTTCCTCCGTCGTCACCGGTGTTCCAATCGGAAAAAAGAAGCAGGGAGGTGGAATCTCTGTACTTATCTGATCATCGAGGTCTGGTTCATCAAACGAGCATGATGAATATGGGTAATAATAGCAGTTACGCTTCACTCCATGATTGGTCTCAAAACTCTATGTGGAGTACTGTGAGCACAACTTCGATTGCAGACAATTCTGGGAGTACTGGTAATAATGGTCATAGTAATGAGCATGATGCTAATAAAGCTGGATCATCTTCTCTGAGTGGAAATCAATGGCCTGACCTACCAGGATATGGCCCTCCTCAATGA 954 0.5094 MMNIPERGGGGGDGGGGGGGEVNNQPQLQPPPQPPPQQRCPRCDSVNTKFCYYNNYSLSQPRYFCKTCKRYWTHGGSLRNIPIGGGCRKGKRTKSSSASSSSSAAALQLMSRQQPLQPRLQEVIPTQPNPMTLPSRVNLVGRSSAMAAQAPAPAVPSISSYYQGGGHLSSLAAIHSQNPSQPLFNLSSLNLVPANLGLHPWFNAPSTQASKHQVPPSSPVFQSEKRSREVESLYLSDHRGLVHQTSMMNMGNNSSYASLHDWSQNSMWSTVSTTSIADNSGSTGNNGHSNEHDANKAGSSSLSGNQWPDLPGYGPPQ 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5862g00008 317 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 260 IPR045174 GO:0003700|GO:0006355
Pral5862g00008 317 MobiDBLite consensus disorder prediction 92 109 - -
Pral5862g00008 317 MobiDBLite consensus disorder prediction 82 109 - -
Pral5862g00008 317 MobiDBLite consensus disorder prediction 206 226 - -
Pral5862g00008 317 Pfam Dof domain, zinc finger 37 92 IPR003851 GO:0003677|GO:0006355
Pral5862g00008 317 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Pral5862g00008 317 MobiDBLite consensus disorder prediction 1 41 - -
Pral5862g00008 317 MobiDBLite consensus disorder prediction 274 307 - -
Pral5862g00008 317 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Pral5862g00008 317 MobiDBLite consensus disorder prediction 206 223 - -
Pral5862g00008 317 MobiDBLite consensus disorder prediction 274 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5862g00008 Pral-Chr5862 96772 98377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5862g00008 23 191 C2C2-Dof Transcription Factor Family AT4G21050 42.604 1.18e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral5862g00008 zf-Dof 6.4e-32 No_clan