Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5862g00005 ATGAGTACTCATTCCACTGGCGAGCAAGCCCGCATAATTCACCTACGAAATGATGATTTGGACTTGGATCTTAACATCACTCCACCACCTGGTGCCAATTTGGAGCAAATGGAGGAAATTACTCAAGTTGATCATCAAGCTGTTCCTCAAACCCACCAGGTTACACAACCTATTGATTTGGAGGCTTTTGATGACGATGATGTTATTTTATCTACGCAAAGCGATTTTCTTGAGGCTAAGAACAATTCAAGAAGGCACCGTGGGAGCACTATAGCTGATGTGGACATATTAGCTAATAATGTAAATCATGCAGCTGATATTACTCCTGACAACCCTAGAAGAGATGATGTTGTTAACCCAACAACTCCTAATTGTGATCCACAATTGAAACTTGAAGACAATGGAAGTTCTCATAAGGAGCAAAAACCTGAAAAGGAGCCTATCTTTACCTGTCCCATATGCATGGACCCATTTGAGGAAGAAGTTTCAACAAAGTGTGGTCATATATTCTGTAGGAGCTGCATTAAGGCCGCTATAAAAGCACAAGGCAAATGCCCTACATGTAGGGTCAAGGTTACTCAAAAAGGCCTCATAAGGGTTTTTTTGCCCTCAGCTAGTTAA 621 0.4138 MSTHSTGEQARIIHLRNDDLDLDLNITPPPGANLEQMEEITQVDHQAVPQTHQVTQPIDLEAFDDDDVILSTQSDFLEAKNNSRRHRGSTIADVDILANNVNHAADITPDNPRRDDVVNPTTPNCDPQLKLEDNGSSHKEQKPEKEPIFTCPICMDPFEEEVSTKCGHIFCRSCIKAAIKAQGKCPTCRVKVTQKGLIRVFLPSAS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5862g00005 206 PANTHER ELFLESS, ISOFORM B 1 204 - -
Pral5862g00005 206 SUPERFAMILY RING/U-box 144 201 - -
Pral5862g00005 206 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Pral5862g00005 206 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Pral5862g00005 206 MobiDBLite consensus disorder prediction 105 144 - -
Pral5862g00005 206 Pfam Zinc finger, C3HC4 type (RING finger) 151 188 - -
Pral5862g00005 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 203 IPR013083 -
Pral5862g00005 206 SMART ring_2 151 188 IPR001841 -
Pral5862g00005 206 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5862g00005 Pral-Chr5862 73223 78218 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5862g00005 33 204 C3H Transcription Factor Family AT3G07200 41.848 6.90e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5862g00005 K22651 - qsa:O6P43_026661 172.17