Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5862g00004 ATGAGTACTCATTCTGTTGGGGGCGATTCTCCTGGAAGTCAGCAAAGGGGTGCTGTCGTGGGCTTGGATCTTAATAGGGCTCCACCTCGTGCTAATCATTTGCAAGAGGGACCTTCAATTGTATCAGAATCTCGTGTAGTTCAAGCTGTCCAGCAACCACAGTTTATGCAGCCTATTGATGTGGAGGCTACTGATGATGATGTTATTGAATCTACACGAAGTGCTTTTGTTGAGGCTAGAAATAATTCAAGAAGAAATCGTGGGAGGACTATAATTGATGTGGATTTAGATCATGTAAGTCAGGTGACTGAAATTTCTCCCAACGACTGCAGAGGAGATTCTCTGTGCCAAACAGTTCCTAATTGTGATGTATATATAAACTTGGAAGGAAGTAGCAGTTCTGAGAGGGAGGAAAATATAAAGTCAACTGAACCTCCAAAGGAGCCTGTCTTTCATTGCCCAATATGTACAAAACCATTTGTGGAAGAAGTGTTGACAAGGTGTGGTCATATATTTTGTAAGAGATGCATTAAGGATACTTTAAAAGCACAAGGCAAATGCCCTACATGTGAGCAGAAGGTTACTGCAAAAGGGCTCATAAGGGTGTTTCTACCATCAACTGGCTCTCCTTAA 633 0.4202 MSTHSVGGDSPGSQQRGAVVGLDLNRAPPRANHLQEGPSIVSESRVVQAVQQPQFMQPIDVEATDDDVIESTRSAFVEARNNSRRNRGRTIIDVDLDHVSQVTEISPNDCRGDSLCQTVPNCDVYINLEGSSSSEREENIKSTEPPKEPVFHCPICTKPFVEEVLTRCGHIFCKRCIKDTLKAQGKCPTCEQKVTAKGLIRVFLPSTGSP 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5862g00004 210 PANTHER ELFLESS, ISOFORM B 10 207 - -
Pral5862g00004 210 ProSitePatterns Zinc finger RING-type signature. 168 177 IPR017907 -
Pral5862g00004 210 ProSiteProfiles Zinc finger RING-type profile. 153 191 IPR001841 -
Pral5862g00004 210 Pfam Zinc finger, C3HC4 type (RING finger) 153 190 - -
Pral5862g00004 210 SUPERFAMILY RING/U-box 148 203 - -
Pral5862g00004 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 205 IPR013083 -
Pral5862g00004 210 SMART ring_2 153 190 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5862g00004 Pral-Chr5862 38764 43039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5862g00004 12 207 C3H Transcription Factor Family AT5G48655 43.434 4.98e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5862g00004 zf-C3HC4_2 5.5e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5862g00004 K22651 - qsa:O6P43_016885 220.705