Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5861g00007 ATGATGGGCTACTGCATTACTGATCGATCGATCTTCATGGGGGAAAACCCTAGTTCTTCATCCAGAACTACTGACAGAAAATTAATCGAGAGGAATCGGAGATATCAAATGAAGGCTCTCTACTCAAAGCTCAACTCTCTTGTGCCTCATCAAAGTCCAAGGGAGGCTATTCCATTACCTGATCAGTTAGAGGAAGCCACCAGTTACATAAAGAAGTTACAGATGAAGTTGGAGAAAATGAAGGAGAAGAAGGACAGCCTAATTGCCATTAATAATCAAAGGTCGAACTTCATCCAACATAGAGAAATGATTAAGGGATCAAAATCATCGCCACGGTTTGAGATCCTAGAAGTGGGCACTATTGCCTTACAAGTTGTTCTGAGAACTGAATCGGACAGTGAGTTTTCGTTAACTGACATCATTCGACTTCTTCATGAAGAAGGAGCAGATATTGTTACTGCCAATTACACAGTTGTTGAAGATGTAGTTATTCATACGATACACTGTGAGGTCGAGGAATCCGTCAACGTTGCTGCAATGATATCTGAGAGATTAAAGAGATTGTAG 567 0.4074 MMGYCITDRSIFMGENPSSSSRTTDRKLIERNRRYQMKALYSKLNSLVPHQSPREAIPLPDQLEEATSYIKKLQMKLEKMKEKKDSLIAINNQRSNFIQHREMIKGSKSSPRFEILEVGTIALQVVLRTESDSEFSLTDIIRLLHEEGADIVTANYTVVEDVVIHTIHCEVEESVNVAAMISERLKRL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5861g00007 188 SMART finulus 27 79 IPR011598 GO:0046983
Pral5861g00007 188 Gene3D - 14 102 IPR036638 GO:0046983
Pral5861g00007 188 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 21 73 IPR011598 GO:0046983
Pral5861g00007 188 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 21 187 - -
Pral5861g00007 188 FunFam Transcription factor bHLH162 13 99 - -
Pral5861g00007 188 Pfam Helix-loop-helix DNA-binding domain 25 74 IPR011598 GO:0046983
Pral5861g00007 188 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 88 IPR036638 GO:0046983
Pral5861g00007 188 Coils Coil 63 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5861g00007 Pral-Chr5861 128044 129932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5861g00007 18 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 43.017 2.78e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5861g00007 HLH 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5861g00007 - - gmx:100784418 175.252